Gene [FLAX] | FIBexDB

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT1G07670	1529 / 0	ATECA4	endomembrane-type CA-ATPase 4 (.1)
AT1G07810	1528 / 0	ATECA1, ACA3, ECA1	ER-type Ca2+-ATPase 1, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 1, ER-type Ca2+-ATPase 1 (.1)
AT4G00900	1197 / 0	ATECA2, ECA2	ER-type Ca2+-ATPase 2, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ER-type Ca2+-ATPase 2 (.1)
AT1G10130	703 / 0	ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1)
AT1G27770	311 / 1e-87	PEA1, ACA1	PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2)
AT5G57110	310 / 6e-87	AT-ACA8, ACA8	"AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2)
AT4G37640	308 / 1e-86	ACA2	calcium ATPase 2 (.1)
AT2G22950	306 / 5e-86	ACA7	auto-regulated Ca2+-ATPase 7, Cation transporter/ E1-E2 ATPase family protein (.1)
AT3G57330	305 / 1e-85	ACA11	autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1)
AT4G29900	302 / 3e-84	CIF1, ATACA10, ACA10	COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10028139 [exp]	1683 / 0	AT1G07670	1798 / 0.0	endomembrane-type CA-ATPase 4 (.1)
Lus10042843 [exp]	1675 / 0	AT1G07670	1799 / 0.0	endomembrane-type CA-ATPase 4 (.1)
Lus10038484 [exp]	973 / 0	AT1G07670	816 / 0.0	endomembrane-type CA-ATPase 4 (.1)
Lus10007734 [exp]	711 / 0	AT1G10130	1639 / 0.0	ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1)
Lus10018668 [exp]	695 / 0	AT1G10130	1524 / 0.0	ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1)
Lus10016366 [exp]	308 / 2e-86	AT2G41560	1463 / 0.0	"autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
Lus10025199 [exp]	306 / 3e-86	AT4G37640	1591 / 0.0	calcium ATPase 2 (.1)
Lus10031053 [exp]	302 / 9e-85	AT2G41560	1480 / 0.0	"autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
Lus10011522 [exp]	301 / 3e-84	AT4G37640	1704 / 0.0	calcium ATPase 2 (.1)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.001G233400 [exp]	1548 / 0	AT1G07670	1800 / 0.0	endomembrane-type CA-ATPase 4 (.1)
Potri.009G025700 [exp]	1542 / 0	AT1G07670	1743 / 0.0	endomembrane-type CA-ATPase 4 (.1)
Potri.014G101900 [exp]	1186 / 0	AT4G00900	1698 / 0.0	ER-type Ca2+-ATPase 2, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ER-type Ca2+-ATPase 2 (.1)
Potri.002G117400 [exp]	693 / 0	AT1G10130	1648 / 0.0	ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1)
Potri.014G014700 [exp]	689 / 0	AT1G10130	1659 / 0.0	ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1)
Potri.006G072900 [exp]	321 / 2e-90	AT4G29900	1549 / 0.0	COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1)
Potri.007G055500 [exp]	313 / 1e-88	AT4G37640	1721 / 0.0	calcium ATPase 2 (.1)
Potri.008G008100 [exp]	315 / 2e-88	AT3G21180	1562 / 0.0	autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1)
Potri.005G052700 [exp]	312 / 4e-88	AT3G63380	1233 / 0.0	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Potri.013G040201 [exp]	312 / 5e-88	AT3G63380	1198 / 0.0	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
		PF00689 [flax] [poplar]	Cation_ATPase_C	Cation transporting ATPase, C-terminus
CL0137 [flax] [poplar]	HAD	PF00702 [flax] [poplar]	Hydrolase	haloacid dehalogenase-like hydrolase
CL0137 [flax] [poplar]		PF00690 [flax] [poplar]	Cation_ATPase_N	Cation transporter/ATPase, N-terminus
CL0137 [flax] [poplar]		PF00122 [flax] [poplar]	E1-E2_ATPase	E1-E2 ATPase

Representative CDS sequence

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>Lus10023328 pacid=23180914 polypeptide=Lus10023328 locus=Lus10023328.g ID=Lus10023328.BGIv1.0 annot-version=v1.0

ATGGGGAGGGGAGGTGAGGACTCCGGTAAGAGTGAAAAACTCGGAGTTGAATCGGAAAATCGCGGAGTATTCCCAGCTTGGGCGAAAGACGTGAAGGAAT

GCGAGGCTGAATACGAGGTTGATAGTCATTACGGGCTTTCGGTTGCGGAAGTGGCGAAGAGGCTCGATATCCATGGTTACAACGAGTTGGAGAAGCACGA

AGGGACGTCGATTTGGGAGTTGATAGTGGAGCAATTCAAGGACACTTTAGTTAGGATATTGTTGGCCGCTGCAGTCATATCTTTTGTTTTGGCTTGGTAT

GATGGCAAGGAAGGCGGGGAGATGGAGATCACTGCTTTTGTGGAGCCATTGGTGATTTTCTTGATATTGATTGTTAATGCGATCGTGGGGATTTGGCAGG

AAAGCAATGCGGAGAAAGCATTGGAAGCGTTGAAGGAAATCCAGTCAGAGACTGCCGCTGTTTTAAGGGATGGGAAGAAGATTTCAAGCTTGCCGGCGAA

GGAACTTGTTCCTGGTGATATTGTGGAGTTGAGGGTAGGAGATAAGGTGCCTGCTGATATGCGGGTTTTGAGTTTGGTCAGCTCCACGGTGAGGGTTGAG

CAAGGTTCTTTGACGGGAGAAAGTGAAGCTGTGAGCAAGACTGTTAAAACTGTTGCTGAGCATACAGATATTCAGGGGAAAAAATGTATGCTTTTTGCCG

GAACCACGGTGGTGAATGGTAATTGCATGTGTTTGGTCACTGGGACTGGAATGAACACTGAGATAGGTAAGGTGCATTCACAAATTCATGAAGCCTCCCA

ACACGAGGAAGATACCCCGTTGAAGAAGAAGTTGAATGAGTTTGGAGAGGCTCTAACCATGATTATTGGCGTTATTTGTGCATTGGTTTGGCTTATTAAT

GTCAAGTACTTCCTCAGTTGGGAATACGTTGATGGCTGGCCGAGAAACTTCAAGTTCTCATTTGAGAAGTGCACCTATTACTTCGAGATTGCTGTGGCAT

TGGCAGTGGCTGCAATACCTGAAGGATTACCAGCAGTCATTACAACTTGTTTGGCACTTGGAACTCGGAAAATGGCTCAGAAAAATGCTCTTGTCAGGAA

GCTGCCAAGTGTTGAAACTCTTGGTTGTACCACTGTCATTTGCTCTGATAAGACAGGTACCCTCACAACCAATCAGATGGCTGTATCAAAGCTTGTGGCT

ATGGGGTCCATGGCTGGAAATCTGAGATCATTTAATGTGGAGGGCACAACTTACAATCCCTGTGATGGTAAAATTGAAGATTGGCCAGTTGGTCGAATAG

ATTCTAACCTTCAGATGATCGCAAAGATTTCTGCCATTTGTAATGATGCTGGTGTGGAACAATCAGGACAGCAATATATTTCTACAGGAATGCCTACAGA

GGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGGAACTTGTTCCTGGTGATATTGTGGAGTTG

AGGGTAGGAGATAAGGTGCCTGCTGATATGCGGGTTTTGAGTTTGGTCAGCTCCACGGTGAGGGTTGAGCAAGGTTCTTTGACGGGAGAAAGTGAAGCTG

TGAGCAAGACTGTTAAAACTGTTGCTGAGCATACAGATATTCAGGGGAAAAAATGTATGCTTTTTGCCGGAACCACGGTGGTGAATGGTAATTGCATGTG

TTTGGTCACTGGGACTGGAATGAACACTGAGATAGGTAAGGTGCATTCACAAATTCATGAAGCCTCCCAACACGAGGAAGATACCCCGTTGAAGAAGAAG

TTGAATGAGTTTGGAGAGGCTCTAACCATGATTATTGGCGTTATTTGTGCATTGGTTTGGCTTATTAATGTCAAGTACTTCCTCAGTTGGGAATACGTTG

ATGGCTGGCCGAGAAACTTCAAGTTCTCATTTGAGAAGTGCACCTATTACTTCGAGATTGCTGTGGCATTGGCAGTAGCTGCAATACCTGAAGGATTACC

AGCAGTCATTACAACTTGTTTGGCACTTGGAACTCGGAAAATGGCTCAGAAAAATGCTCTTGTCAGGAAGCTGCCAAGTGTTGAAACTCTTGGTTGTACC

ACTGTCATTTGCTCTGATAAGACAGGTACCCTCACAACCAATCAGATGGCTGTATCAAAGCTTGTGGCTATGGGGTCCATGGCTGGAAATCTGAGATCAT

TTAATGTGGAGGGCACAACTTACAATCCCTGTGATGGTAAAATTGAAGATTGGCCAGTTGGTCGAATAGATTCTAACCTTCAGATGATCGCAAAGATTTC

TGCCATTTGTAATGATGCTGGTGTGGAACAATCAGGACAGCAATATATTTCTACAGGAATGCCTACAGAGGCTGCACTAAAGGTTTTGGTTGAGAAAATG

GGGTTTCCTGGAGGAGTCAATAATGAATCTTCTTCTGTTAGTGACGATATTTTACGTTGTTCTAGCCTATTGAATAAGATGGAACAGCGATTTGCAACTC

TAGAATTTGACCGAGACAGAAAATCAATGGGTGTCATTGTCAATTCTAGCTCCGGTAGAAAGTTGCTATTCGTGAAGGGTGCTGTGGAGAACGTGTTGGA

GAGAAGTACGCATATTCAATTGCTTGATGGATCTATTGTAGAACTAGACCAATACTCGAGGGATCATATACTACAGAGCCTTCATGACATGTCAACAACT

GCATTACGATGCCTTGGATTTGCATACAAAGAGGATCTTCCAGAGTTTGACACATACAATGGTGATGAAGACCATCCAGCTCATCAGCTGCTACTTAATC

CAGCTAATTATTCCAACATCGAGAGTAAACTTGTGTTTGTCGGTTTGGCTGGGCTAAGGGACCCACCAAGGAAAGAAGTTCCTCAAGCAATTGAAGACTG

CAGGGCTGCCGGAATCAGAGTTATGGTTATTACTGGAGACAACAAAAACACCGCAGAGGCAATTTGCCGTGAAATTGGTGTCTTTGGACGTTATGATGAT

ATTAGTTCGAGAAGCTTTACTGGCAGAGATTTGATGGACCATCCCAACAAGAAGGAGGTTTTGAGACAGAGCGGAGGCCTATTATTCTCTCGAGCAGAAC

CGAGACACAAGCAAGAAATAGTGAGGTTATTGAAGGAGGAAGGAGAGGTGGTTGCAATGACTGGAGATGGGGTGAATGATGCACCTGCTTTGAAGCTGGC

TGACATCGGGATCGCAATGGGCATTTCCGGGACAGAGGTGGCAAAGGAAGCTTCAGATATGGTGTTGGCGGATGACAATTTCAGTACCATTGTTGCTGCT

GTGGGTGAAGGCCGGTCCATTTACAATAACATGAAGGCATTTATCAGGTACATGATATCATCAAACATGGGTGAGGTTGCATCCATATTCTTGACAGCGG

CTTTGGGTATCCCGGAGGGGATGATTCCGGTCCAACTATTATGGGTTAATCTCGTCACTGACGGGCCACCCGCGACAGCTTTAGGATTCAACCCGGCTGA

CAAGGATATCATGAAGAAGCCTCCCAGAAGAAGCAATGATTCTTTGATCACCGCCTGGATATTATTCCGCTACCTGGTGATTGGTCTCTATGTCGGAATA

GCAACCGTCGGAGTATTCGTGATATGGTACACTCACAGCTCATTCATGGGCATCGACCTGAGCGGAGACGGCCACACTCTGGTCACCTACTCCCAGCTCG

TCAGCTGGGATAAATGCCAATCGTGGAACAACTTCACGGTTTCGCCCTTCACAGCTGGGGCTCAGACCATCAAGTTCGATTCGAACCCGTGCGAATACTT

CCGGTCCGGTAAGATCAAGGCTTCGACACTATCACTCTCCGTGCTTGTGGCTATCGAGATGTTCAACTCGCTGAACGCTCTTTCCGAGGACGGAAGTCTT

CTGACAATGCCTCCGTGGGTGAATCCCTTCCTACTGCTGGCGATGGCGGTATCGTTCGGGATGCACTTTTTGATCCTGTACGTGCCGATCCTCGCCCAGA

TTTTCGGAATCGTGCCGCTCAGTTTGAACGAGTGGCTGTTGGTTGTGGCCGTTGCTTTCCCTGTCATTCTGATTGATGAAGTGCTCAAGTTTGTAGGAAG

GTTGACTAGCGAGTCGAGGCATTCTCGCACGAGCTTGGCTAAGTCGAAATCAGACTGA

AA sequence

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>Lus10023328 pacid=23180914 polypeptide=Lus10023328 locus=Lus10023328.g ID=Lus10023328.BGIv1.0 annot-version=v1.0

MGRGGEDSGKSEKLGVESENRGVFPAWAKDVKECEAEYEVDSHYGLSVAEVAKRLDIHGYNELEKHEGTSIWELIVEQFKDTLVRILLAAAVISFVLAWY

DGKEGGEMEITAFVEPLVIFLILIVNAIVGIWQESNAEKALEALKEIQSETAAVLRDGKKISSLPAKELVPGDIVELRVGDKVPADMRVLSLVSSTVRVE

QGSLTGESEAVSKTVKTVAEHTDIQGKKCMLFAGTTVVNGNCMCLVTGTGMNTEIGKVHSQIHEASQHEEDTPLKKKLNEFGEALTMIIGVICALVWLIN

VKYFLSWEYVDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVSKLVA

MGSMAGNLRSFNVEGTTYNPCDGKIEDWPVGRIDSNLQMIAKISAICNDAGVEQSGQQYISTGMPTEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKELVPGDIVEL

RVGDKVPADMRVLSLVSSTVRVEQGSLTGESEAVSKTVKTVAEHTDIQGKKCMLFAGTTVVNGNCMCLVTGTGMNTEIGKVHSQIHEASQHEEDTPLKKK

LNEFGEALTMIIGVICALVWLINVKYFLSWEYVDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCT

TVICSDKTGTLTTNQMAVSKLVAMGSMAGNLRSFNVEGTTYNPCDGKIEDWPVGRIDSNLQMIAKISAICNDAGVEQSGQQYISTGMPTEAALKVLVEKM

GFPGGVNNESSSVSDDILRCSSLLNKMEQRFATLEFDRDRKSMGVIVNSSSGRKLLFVKGAVENVLERSTHIQLLDGSIVELDQYSRDHILQSLHDMSTT

ALRCLGFAYKEDLPEFDTYNGDEDHPAHQLLLNPANYSNIESKLVFVGLAGLRDPPRKEVPQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFGRYDD

ISSRSFTGRDLMDHPNKKEVLRQSGGLLFSRAEPRHKQEIVRLLKEEGEVVAMTGDGVNDAPALKLADIGIAMGISGTEVAKEASDMVLADDNFSTIVAA

VGEGRSIYNNMKAFIRYMISSNMGEVASIFLTAALGIPEGMIPVQLLWVNLVTDGPPATALGFNPADKDIMKKPPRRSNDSLITAWILFRYLVIGLYVGI

ATVGVFVIWYTHSSFMGIDLSGDGHTLVTYSQLVSWDKCQSWNNFTVSPFTAGAQTIKFDSNPCEYFRSGKIKASTLSLSVLVAIEMFNSLNALSEDGSL

LTMPPWVNPFLLLAMAVSFGMHFLILYVPILAQIFGIVPLSLNEWLLVVAVAFPVILIDEVLKFVGRLTSESRHSRTSLAKSKSD

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At alias	At description	Locus	MR	r
AT1G07670	ATECA4	endomembrane-type CA-ATPase 4 ...	Lus10023328 [exp]	0	1
AT1G53310	ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...	Lus10020701 [exp]	6.9	0.8721
AT3G24480		Leucine-rich repeat (LRR) fami...	Lus10017727 [exp]	7.1	0.8850
AT4G00740	QUA3	QUASIMODO 3, S-adenosyl-L-meth...	Lus10000808 [exp]	14.1	0.8634
AT1G34130	STT3B	staurosporin and temperature s...	Lus10041985 [exp]	15.0	0.8787
AT1G72480		Lung seven transmembrane recep...	Lus10008125 [exp]	20.7	0.8667
AT4G33410	ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...	Lus10039239 [exp]	28.8	0.8555
AT5G46570	BSK2	BR-signaling kinase 2 (.1)	Lus10035136 [exp]	30.3	0.8559
AT1G34130	STT3B	staurosporin and temperature s...	Lus10017990 [exp]	34.0	0.8500
AT4G34200	EDA9	embryo sac development arrest ...	Lus10019818 [exp]	37.5	0.8588
AT4G12730	FLA2	FASCICLIN-like arabinogalactan...	Lus10006391 [exp]	38.0	0.8298

Lus10023328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Lus10023328 [FLAX]

DESeq2's median of ratios [FLAX]

Coexpressed genes

Lus10023328 coexpression network