Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14080 55 / 1e-08 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18350 52 / 8e-08 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G44630 51 / 2e-07 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G49140 51 / 2e-07 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G44480 50 / 3e-07 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G69550 48 / 2e-06 disease resistance protein (TIR-NBS-LRR class) (.1) AT4G19050 47 / 3e-06 NB-ARC domain-containing disease resistance protein (.1) AT3G15410 47 / 3e-06 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT4G16890 46 / 9e-06 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT2G25790 46 / 1e-05 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038482 [exp] 312 / 3e-99 AT1G69550 386 / 3e-113 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10023272 [exp] 179 / 1e-51 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10000945 [exp] 147 / 7e-41 AT1G69550 112 / 3e-25 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10038533 [exp] 143 / 3e-39 AT1G27170 386 / 7e-114 transmembrane receptors;ATP binding (.1.2) Lus10020534 [exp] 137 / 6e-37 AT5G36930 414 / 1e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020533 [exp] 133 / 1e-35 AT1G27170 405 / 1e-122 transmembrane receptors;ATP binding (.1.2) Lus10004911 [exp] 133 / 1e-35 AT1G27170 387 / 5e-115 transmembrane receptors;ATP binding (.1.2) Lus10023487 [exp] 132 / 3e-35 AT5G36930 284 / 4e-78 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004115 [exp] 130 / 9e-35 AT5G27970 689 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068200 [exp] 70 / 9e-14 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.T005501 [exp] 61 / 8e-11 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G282300 [exp] 52 / 6e-08 AT5G36930 413 / 3e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 51 / 2e-07 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G009400 [exp] 51 / 2e-07 AT5G36930 504 / 4e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.017G104301 [exp] 50 / 5e-07 AT5G17680 566 / 1e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.002G258200 [exp] 50 / 5e-07 AT4G08850 674 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G258000 [exp] 49 / 8e-07 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.007G016700 [exp] 49 / 1e-06 AT5G46330 286 / 5e-84 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G097832 [exp] 49 / 1e-06 AT4G12010 148 / 8e-38 Disease resistance protein (TIR-NBS-LRR class) family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023330 pacid=23180973 polypeptide=Lus10023330 locus=Lus10023330.g ID=Lus10023330.BGIv1.0 annot-version=v1.0 ATGAGAGGTGAAGATTTTGAGCTGACAGACACTGAATTCAAGAAATTATCTGGCTTAGAATATCTAGATGTGAGGAATGGAAGAGTAACTGGAGATTTTA AAGACATTCTTCCACATGTTTCACCCAAGCTTAAAGTTGTGGATGTATGGTCTTGTAAGGATTTAGAGACGGCTCCCAACTTGTCTCAGTGTCAAAGTGT AGAGCGTTTAAAACTCCAGGACTGTCAGAAGATGAGAGGGGAACTGCATATTGGTAATTTTAAGAAACTAAAAGTGCTGAAGCTCGGGTATACTAAAATA ACGAAGTTAACAGGCGGCATGGGAGTTCTTAAGAATCTCCAGGAGATTGATGCAGGGAACTCCTATTTGACAGAAGTGCCTTCTGGTATTGCCGAATTAT CCTCTCTTAAAACCTTGGATCTAAGGTCGCATAAACTGGGATTGAAGGAATTACCAACACTCCCTAAAAGTTTAAAGCGCCTATATCTCTCATCGCCATG GGTGCCTAACCTTTTGGCGCTCAAGGACTTGAAAGAGCTAGGGTTTTCAAATTGTGAAGCTCCTGAAATTCCAGGGGATGTATGGATGCTATCCAAGTTG AAGTCTTTGAGTCTGTCGGACTGCACCTGTGAAAGTCTCTAG
AA sequence Show only first row Show all	>Lus10023330 pacid=23180973 polypeptide=Lus10023330 locus=Lus10023330.g ID=Lus10023330.BGIv1.0 annot-version=v1.0 MRGEDFELTDTEFKKLSGLEYLDVRNGRVTGDFKDILPHVSPKLKVVDVWSCKDLETAPNLSQCQSVERLKLQDCQKMRGELHIGNFKKLKVLKLGYTKI TKLTGGMGVLKNLQEIDAGNSYLTEVPSGIAELSSLKTLDLRSHKLGLKELPTLPKSLKRLYLSSPWVPNLLALKDLKELGFSNCEAPEIPGDVWMLSKL KSLSLSDCTCESL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14080			Disease resistance protein (TI...		Lus10023330 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10023329 [exp]	1.0	0.9385
AT4G21870			HSP20-like chaperones superfam...		Lus10007666 [exp]	2.0	0.8371
AT5G55710		AtTic20-V	translocon at the inner envelo...		Lus10031203 [exp]	4.2	0.8146
					Lus10007688 [exp]	6.2	0.7325
					Lus10027443 [exp]	8.8	0.7712
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10012524 [exp]	9.6	0.8023
					Lus10038412 [exp]	9.8	0.7596
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10037559 [exp]	10.7	0.7767
AT3G20810		JMJ30, JMJD5	2-oxoglutarate (2OG) and Fe(II...		Lus10031247 [exp]	18.7	0.7313
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10035240 [exp]	21.5	0.6948

Compare expression of checked genes

Lus10023330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.