Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28610 109 / 2e-30 HD PRS1, PRS, WOX3 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1) AT3G18010 96 / 1e-24 HD WOX1 WUSCHEL related homeobox 1 (.1) AT1G46480 84 / 1e-20 HD WOX4 WUSCHEL related homeobox 4 (.1) AT3G11260 82 / 2e-20 HD WOX5B, WOX5 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) AT5G05770 80 / 2e-20 HD WOX5A, WOX7 WUSCHEL related homeobox 5A, WUSCHEL related homeobox 7 (.1) AT5G59340 81 / 2e-19 HD WOX2 WUSCHEL related homeobox 2 (.1) AT2G17950 77 / 6e-18 HD WUS1, PGA6, WUS WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) AT2G01500 74 / 9e-17 HD WOX6, PFS2, HOS9 WUSCHEL RELATED HOMEOBOX 6, PRETTY FEW SEEDS 2, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE 9, Homeodomain-like superfamily protein (.1) AT1G20710 57 / 5e-11 HD WOX13B, WOX10 WUSCHEL related homeobox 13B, WUSCHEL related homeobox 10 (.1) AT2G33880 57 / 1e-10 HD WOX9A, STIP, WOX9, HB-3 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038480 [exp] 127 / 4e-38 AT2G28610 130 / 1e-37 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1) Lus10042007 [exp] 92 / 6e-23 AT3G18010 174 / 2e-50 WUSCHEL related homeobox 1 (.1) Lus10018011 [exp] 91 / 2e-22 AT3G18010 164 / 9e-47 WUSCHEL related homeobox 1 (.1) Lus10024808 [exp] 89 / 3e-22 AT1G46480 195 / 7e-62 WUSCHEL related homeobox 4 (.1) Lus10018726 [exp] 85 / 6e-22 AT1G46480 121 / 8e-35 WUSCHEL related homeobox 4 (.1) Lus10028271 [exp] 84 / 8e-21 AT3G11260 177 / 4e-56 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Lus10040219 [exp] 84 / 1e-20 AT3G11260 179 / 4e-57 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Lus10040840 [exp] 79 / 2e-18 AT5G59340 110 / 7e-29 WUSCHEL related homeobox 2 (.1) Lus10016569 [exp] 78 / 2e-18 AT5G59340 121 / 6e-33 WUSCHEL related homeobox 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G025300 [exp] 87 / 2e-22 AT1G46480 226 / 5e-75 WUSCHEL related homeobox 4 (.1) Potri.002G124100 [exp] 87 / 2e-22 AT1G46480 221 / 1e-72 WUSCHEL related homeobox 4 (.1) Potri.012G047700 [exp] 87 / 2e-21 AT3G18010 174 / 8e-51 WUSCHEL related homeobox 1 (.1) Potri.008G065400 [exp] 84 / 3e-21 AT3G11260 176 / 9e-57 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Potri.015G039100 [exp] 86 / 7e-21 AT3G18010 195 / 3e-59 WUSCHEL related homeobox 1 (.1) Potri.010G192100 [exp] 82 / 1e-20 AT3G11260 159 / 1e-49 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Potri.010G111400 [exp] 81 / 2e-19 AT3G18010 109 / 2e-27 WUSCHEL related homeobox 1 (.1) Potri.007G012100 [exp] 79 / 6e-19 AT2G17950 126 / 9e-35 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) Potri.005G114700 [exp] 79 / 6e-19 AT2G17950 129 / 1e-35 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) Potri.009G029200 [exp] 76 / 1e-17 AT5G59340 171 / 2e-52 WUSCHEL related homeobox 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10023332 pacid=23180967 polypeptide=Lus10023332 locus=Lus10023332.g ID=Lus10023332.BGIv1.0 annot-version=v1.0 ATGATACTCGAGGAGCTTTACAGGAGTGGTGTGAGAACTCCCAACGCATCTCATATCCAGAGAATCACAGCTCACCTCTCTATGTATGGAAAGATCGAGG GCAAGAACGTCTTTTACTGGTTCCAGAATCACAAGGCTAGGGACCGTCAGAAGCTTAGGAGGAAACTCATCAAGCAACTTCATCAGCATCAGCCTCAACA TTTACCATCTTATGATCATCTTCAAAATCAGTCTAGTAGTATTAATAATAATAGCTTCCTCCTTAACTACTTTGGATATGCTCCGACTCCACCTCATCCT CCACCTCATCGTCCTCTTCATCAGGGAGATGATTGGTTTGTCTTACTCGGTTTTGGTTAG
AA sequence Show only first row Show all	>Lus10023332 pacid=23180967 polypeptide=Lus10023332 locus=Lus10023332.g ID=Lus10023332.BGIv1.0 annot-version=v1.0 MILEELYRSGVRTPNASHIQRITAHLSMYGKIEGKNVFYWFQNHKARDRQKLRRKLIKQLHQHQPQHLPSYDHLQNQSSSINNNSFLLNYFGYAPTPPHP PPHRPLHQGDDWFVLLGFG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28610	HD	PRS1, PRS, WOX3	WUSCHEL RELATED HOMEOBOX 3, PR...		Lus10023332 [exp]	0	1
AT2G45970		CYP86A8, LCR	LACERATA, "cytochrome P450, fa...		Lus10018830 [exp]	1.0	0.9580
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10008208 [exp]	2.4	0.9477
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10013956 [exp]	3.9	0.9408
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10024819 [exp]	7.3	0.9175
AT3G57440			unknown protein		Lus10031072 [exp]	7.7	0.9233
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10005279 [exp]	12.7	0.9139
AT5G27780			SAUR-like auxin-responsive pro...		Lus10023969 [exp]	15.4	0.9183
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10019086 [exp]	17.8	0.9508
AT1G17260		AHA10	autoinhibited H\(+\)-ATPase is...		Lus10037466 [exp]	22.8	0.9413
AT5G02540			NAD(P)-binding Rossmann-fold s...		Lus10025321 [exp]	29.3	0.8982

Compare expression of checked genes

Lus10023332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.