Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038478 [exp] 545 / 0 ND / Lus10031949 [exp] 382 / 4e-134 ND / Lus10005172 [exp] 184 / 2e-56 ND / Lus10038131 [exp] 105 / 4e-26 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G102400 [exp] 348 / 7e-121 ND / Potri.015G100500 [exp] 336 / 8e-116 ND / Potri.001G341700 [exp] 323 / 4e-111 ND / Potri.015G100600 [exp] 311 / 2e-106 ND / Potri.005G059400 [exp] 174 / 2e-52 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00704 [flax] [poplar] Glyco_hydro_18 Glycosyl hydrolases family 18
Representative CDS sequence Show only first row Show all	>Lus10023333 pacid=23181043 polypeptide=Lus10023333 locus=Lus10023333.g ID=Lus10023333.BGIv1.0 annot-version=v1.0 ATGGTTCCAACACTACTCCTCTGCCTCCTCGCCGGATTCTCCTCCTCCCAAGCCGGAGCACAACTCATCTTCCGAGAATACATCGGAGCAGAAGGCAACA ACGTCCAATTCTCCGACGTACCCATCATCAGCGACTCCCTCGAATTCCACTTCATCCTCTCCTTCGCCGTCGATTACACCACCGCCGGTTCGCCAACCAA CGGAGTCTTCACCCCCTTTTGGGACACCGGCAACCTCGACCGTTCCACCGTCTCCTCCATCAAATCCCGCCACCCTAACCTTAAAGTCGCTGTCAGCCTC GGCGGCGACACGGTCGTCGACGACAAACATTTCGTCTTCTTTAAGCCTAAATCCGTCGAATCCTGGCTCGCGAACGCGGTCGGAACCATCACGAAGATGG TAACCGATTACAATCTGGACGGGATCGACATCGATTACGAGCATTTCGATTCCCACCTCGACCCGGATACGTTCGCCGATGCAATCGGCCAGCTCATACA ACATTTAAAGAGCCAGAAGGTTATCAAGTTCGCGTCGATCGCGCCGTTTGATGATGATAACGTGCAGAGGTATTACAAGGCGCTGTGGGGGAAGTACGGA GATTTAATCGACTATGTGAATTTCCAATTCTACTCGTACGGCCAAGGGGTCGATGTTGAGAAGTTTCTCAAGTTTTACGACGAGCAGAGTGGGAACTACG CCGGCGGGAAGGTGCTGGTGAGCTTTGCGACGGATGGTAGCGGAGGGTTGAAGCCGGAGGGAGGGTTCTTCAAGGCGTGCGGTGAGCTGAAAAGGAAGAA GAAGCTTCACGGGATATTTATATGGTCGGCGGATGATTCCAAGAAGCTCAAGTTTAAGCCGGAGATTCAGTCGCAGAATTTCCTCCTTGCTCCGAAGTAA
AA sequence Show only first row Show all	>Lus10023333 pacid=23181043 polypeptide=Lus10023333 locus=Lus10023333.g ID=Lus10023333.BGIv1.0 annot-version=v1.0 MVPTLLLCLLAGFSSSQAGAQLIFREYIGAEGNNVQFSDVPIISDSLEFHFILSFAVDYTTAGSPTNGVFTPFWDTGNLDRSTVSSIKSRHPNLKVAVSL GGDTVVDDKHFVFFKPKSVESWLANAVGTITKMVTDYNLDGIDIDYEHFDSHLDPDTFADAIGQLIQHLKSQKVIKFASIAPFDDDNVQRYYKALWGKYG DLIDYVNFQFYSYGQGVDVEKFLKFYDEQSGNYAGGKVLVSFATDGSGGLKPEGGFFKACGELKRKKKLHGIFIWSADDSKKLKFKPEIQSQNFLLAPK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10023333 [exp]	0	1
AT3G57030			Calcium-dependent phosphotries...		Lus10019148 [exp]	3.7	0.8748
					Lus10020978 [exp]	5.3	0.8732
					Lus10018224 [exp]	6.2	0.8655
					Lus10007554 [exp]	7.5	0.8634
AT3G54200			Late embryogenesis abundant (L...		Lus10003238 [exp]	9.7	0.8583
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10002688 [exp]	10.4	0.8247
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10002691 [exp]	12.1	0.8336
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10012611 [exp]	13.4	0.8166
					Lus10004849 [exp]	14.1	0.8199
AT2G42760			unknown protein		Lus10019924 [exp]	14.7	0.8279

Compare expression of checked genes

Lus10023333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.