Plant FIBer expression Database

Lus10023334 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G75335 71 / 6e-16 unknown protein
AT5G60030 74 / 1e-15 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038477
[exp]
96 / 1e-25 AT1G75335 64 / 9e-15 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G126701
[exp]
84 / 6e-20 AT1G75335 70 / 7e-16 unknown protein
Potri.019G095600
[exp]
82 / 3e-19 AT1G75335 73 / 6e-17 unknown protein
PFAM info
Representative CDS sequence
>Lus10023334 pacid=23181063 polypeptide=Lus10023334 locus=Lus10023334.g ID=Lus10023334.BGIv1.0 annot-version=v1.0
ATGAAATCGGTAACCGGAGAAATCAAATCCACAACTCCCGTCACACTCGCGAGAGCCGCCACCATTCTCTCCGATTTCGTCGCAGCCGACAACGGCGCTT
CACAGGCTGTCGAAGCGTATCTCCGGCGCGCCAACTCTGCTTTCGACGAGCTGGTCCAATTTCACGCCAACTCCCACCATAGGAGACACCAGAGGCACAC
CAGGCCTACTACTTCTCTCGCGACCGTCGACGACTCACGGAGAGTCGAACAGCAAGAGCTAAATAACGACCCCACGGCTTCGGCTGAGCTTAATAACAGC
AGGAGCGTTCTGATTGAGGAAGAGCAACGTAAAGGCGAGGAGAATGGCGAGGTAGAAGAAGAGGAGTCGATTAGCAAGAAGAAGAAGAAAGAGAAGAGCG
GCGCTGGTACTTCAACGAATGAAGAGAAGTCTGAAGGGGTAAATGTGAAGGTAGTAGATGAAGGTAACGGTGACGTGGATTTGGGAAGCGAGAAGAGGAA
GAAAAAGAAGAAGGATAAGAGTAAAGCAAAAGAGAACGGCGAGGTTGATGGTTACAAAGAAAATGGTGGCGGCATTAGTGAAGGTTTGAATGTGAAGGAA
AAGAATAGAAAGAAGCGGAAGAGTGGAGAAGCTGAGGAGCAAAGGAGTCAGTCAGAAGAGCGGCCAAGGAAGAAGAGGAAGTAG
AA sequence
>Lus10023334 pacid=23181063 polypeptide=Lus10023334 locus=Lus10023334.g ID=Lus10023334.BGIv1.0 annot-version=v1.0
MKSVTGEIKSTTPVTLARAATILSDFVAADNGASQAVEAYLRRANSAFDELVQFHANSHHRRHQRHTRPTTSLATVDDSRRVEQQELNNDPTASAELNNS
RSVLIEEEQRKGEENGEVEEEESISKKKKKEKSGAGTSTNEEKSEGVNVKVVDEGNGDVDLGSEKRKKKKKDKSKAKENGEVDGYKENGGGISEGLNVKE
KNRKKRKSGEAEEQRSQSEERPRKKRK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G60030 unknown protein Lus10023334
[exp]
0 1
AT5G67630 P-loop containing nucleoside t... Lus10011551
[exp]
3.3 0.8675
AT1G02870 unknown protein Lus10001459
[exp]
4.0 0.8586
AT3G55280 RPL23A2, RPL23A... RIBOSOMAL PROTEIN L23A2, ribos... Lus10003290
[exp]
8.0 0.8638
AT4G34880 Amidase family protein (.1) Lus10027853
[exp]
13.6 0.8375
AT3G13882 Ribosomal protein L34 (.1.2) Lus10015609
[exp]
14.1 0.8308
AT4G39880 Ribosomal protein L23/L15e fam... Lus10024048
[exp]
15.2 0.8064
AT5G45590 Ribosomal protein L35 (.1) Lus10010406
[exp]
15.9 0.8636
AT4G16141 GATA GATA type zinc finger transcri... Lus10020684
[exp]
16.0 0.7606
AT5G43970 ATTOM22-V, TOM2... TRANSLOCASE OUTER MITOCHONDRIA... Lus10022876
[exp]
17.1 0.8407
AT3G51010 unknown protein Lus10026320
[exp]
18.0 0.8028

Lus10023334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.