Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60050 498 / 2e-173 BTB/POZ domain-containing protein (.1) AT1G63850 326 / 2e-105 BTB/POZ domain-containing protein (.1) AT3G50780 252 / 2e-77 unknown protein AT2G13690 205 / 3e-59 PRLI-interacting factor, putative (.1) AT3G05675 66 / 3e-11 BTB/POZ domain-containing protein (.1.2) AT3G19920 45 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038475 [exp] 865 / 0 AT5G60050 518 / 0.0 BTB/POZ domain-containing protein (.1) Lus10024658 [exp] 341 / 1e-110 AT1G63850 672 / 0.0 BTB/POZ domain-containing protein (.1) Lus10017511 [exp] 328 / 4e-105 AT1G63850 706 / 0.0 BTB/POZ domain-containing protein (.1) Lus10028772 [exp] 300 / 2e-94 AT1G63850 707 / 0.0 BTB/POZ domain-containing protein (.1) Lus10022484 [exp] 256 / 3e-79 AT3G50780 602 / 0.0 unknown protein Lus10016789 [exp] 209 / 5e-63 AT3G50780 408 / 1e-140 unknown protein Lus10033484 [exp] 175 / 4e-48 AT2G13690 478 / 7e-164 PRLI-interacting factor, putative (.1) Lus10020892 [exp] 172 / 8e-47 AT2G13690 479 / 3e-164 PRLI-interacting factor, putative (.1) Lus10040458 [exp] 70 / 2e-12 AT1G63850 84 / 5e-17 BTB/POZ domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G233900 [exp] 561 / 0 AT5G60050 533 / 0.0 BTB/POZ domain-containing protein (.1) Potri.001G100900 [exp] 333 / 8e-107 AT1G63850 696 / 0.0 BTB/POZ domain-containing protein (.1) Potri.003G131000 [exp] 310 / 6e-98 AT1G63850 653 / 0.0 BTB/POZ domain-containing protein (.1) Potri.007G032800 [exp] 282 / 1e-88 AT3G50780 654 / 0.0 unknown protein Potri.005G129700 [exp] 276 / 1e-86 AT3G50780 623 / 0.0 unknown protein Potri.005G058700 [exp] 215 / 4e-63 AT2G13690 526 / 0.0 PRLI-interacting factor, putative (.1) Potri.007G109300 [exp] 201 / 6e-58 AT2G13690 518 / 4e-180 PRLI-interacting factor, putative (.1) Potri.004G154600 [exp] 66 / 4e-11 AT1G63850 96 / 6e-21 BTB/POZ domain-containing protein (.1) Potri.006G202900 [exp] 57 / 1e-08 AT3G05675 532 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.001G086100 [exp] 56 / 5e-08 AT3G05675 348 / 9e-117 BTB/POZ domain-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023336 pacid=23181044 polypeptide=Lus10023336 locus=Lus10023336.g ID=Lus10023336.BGIv1.0 annot-version=v1.0 ATGCCGACTTCCAAAGAGGTATCGGCGATGATACGACAAGGCTTCATTTCCGACCCAGCACTTTCCTTCTCCTCCTCATCACCAACTCACACCACCACCG TCCTCGGTAGGGTTTTCGGCTCTCCCACCTCCAAAGCCCTCCTCTCTCCGCCGCCCACTTTCACCACAGTCACCGACTCGCCGTCGAACGGAGCGACTAC TGTTACTCGTCCCACTCAAAACCACCCGACGCTCTTCCAGATGATGTCGGAGGAGCAAGCCCTGGAACAGTTCCGCCAGAGATCACAATCCAAAGTCTCC AAGATACTTAGGGAGTTCGAAGCGTTGGCTTCGATGGGAATCGGTGACGTGAGGCTGACGGTGGTCGGGAGAGACGGCCACAACAAGATCTCCATCGACG TCCACAAGAGAGTTTTGATGGAGAAGAGCGGCTTCTTCAGGGAGAAATTGAAAGGGAGGGAGAAAGGGGTTATGATGCATTCCGTGGAGATAATTAGTGA GCTTGACGATGTTGAGATTTACTTGGAGGCTGTAGTTCTCATGTACTACTGTGATGATGATGATCTTATCAAGAGACTCCTCGGTGAGCCCGTCTCCAAG GTCTTGGCCTTGCTCAAGGTTTCTGCTGCAATCATGTTCGAAGTAGGAATGAAAGCATGCTTGGAATATTTGGAAGCTGTTCCATGGACAGAGGACGAAG AAGAAAAGGTCATATCACATCTCTCCGAACTCGACCTTCTCGATCCAGCAACCGAAGCTCTCCAGAGAGTATCATGCCCGTCAACTTCTACCGCAGCAGT AGCAGCAGCTGACGACATATTCTTAAACTTACTCAATGCTGTCCTGCAATCAAAGGACGAGAAAGCTCGCCGAGAAATGAAATCTCTACTCTCCCGTTTG TTCCGACACGATTCACCCGATCATCATGACAGCAAACTCGACGTCTCGAAAGAAACCCTCTATTCTCTTTGCCACAGATGCATCGATTCCCTAGCCTTAT GCTTGTCTGATGCATTAACAAGCGAAATAGCTCGAGAAGCCGAGAACTTGCAGTGGATCGTCAGCATCCTGATCGATAAAAAGCTATGCGACGAATTCGT AAAGCTATGGGCCGATCAGAAGAAACTCGTATCCCTTCATTCGAAGATACCGGCAATGTACCGACACGAAATCAGCAAGATTACAGCACAACTATGCATC GGAATAGGAAGAGGGCAGATCATGGTTGGTACAGAGACTCGGTTTGCATTGCTTTCGAATTGGTTGGAACCGCTGTACGAGGATTTCGGATGGATGAGAA GGGCGGTGGACAAGAAGCTGGTCGAGGATGGGATCGGCCAGACGATTTTGACATTACCCTTGCTTCAGCAGCAAGGAATGTTGATGAACTGGTTTGACAG GTTTCTGAATAAGGGAGATGACTGCCCTAATATCCAGAGAGCGTTTGAGATTTGGTGGAGAAGGGCATTCGTTAGACAGTATTCGCATGAGACGACGGGT GATTCGAAATTGCAGGTTACTGTTTGTGAGTATCAAGATTGA
AA sequence Show only first row Show all	>Lus10023336 pacid=23181044 polypeptide=Lus10023336 locus=Lus10023336.g ID=Lus10023336.BGIv1.0 annot-version=v1.0 MPTSKEVSAMIRQGFISDPALSFSSSSPTHTTTVLGRVFGSPTSKALLSPPPTFTTVTDSPSNGATTVTRPTQNHPTLFQMMSEEQALEQFRQRSQSKVS KILREFEALASMGIGDVRLTVVGRDGHNKISIDVHKRVLMEKSGFFREKLKGREKGVMMHSVEIISELDDVEIYLEAVVLMYYCDDDDLIKRLLGEPVSK VLALLKVSAAIMFEVGMKACLEYLEAVPWTEDEEEKVISHLSELDLLDPATEALQRVSCPSTSTAAVAAADDIFLNLLNAVLQSKDEKARREMKSLLSRL FRHDSPDHHDSKLDVSKETLYSLCHRCIDSLALCLSDALTSEIAREAENLQWIVSILIDKKLCDEFVKLWADQKKLVSLHSKIPAMYRHEISKITAQLCI GIGRGQIMVGTETRFALLSNWLEPLYEDFGWMRRAVDKKLVEDGIGQTILTLPLLQQQGMLMNWFDRFLNKGDDCPNIQRAFEIWWRRAFVRQYSHETTG DSKLQVTVCEYQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60050			BTB/POZ domain-containing prot...		Lus10023336 [exp]	0	1
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10029784 [exp]	3.6	0.8218
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009046 [exp]	5.7	0.8068
AT2G31820			Ankyrin repeat family protein ...		Lus10027075 [exp]	6.2	0.8193
AT1G12530			unknown protein		Lus10007047 [exp]	9.4	0.7837
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10003017 [exp]	10.9	0.7876
AT5G64210		AOX2	alternative oxidase 2 (.1)		Lus10020523 [exp]	12.0	0.7944
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039926 [exp]	15.5	0.7960
AT3G05675			BTB/POZ domain-containing prot...		Lus10033220 [exp]	17.3	0.7966
AT2G16365			F-box family protein (.1.2.3.4...		Lus10023554 [exp]	20.7	0.7736
AT1G02290			unknown protein		Lus10028606 [exp]	20.8	0.7589

Compare expression of checked genes

Lus10023336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.