Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52300 269 / 9e-94 ATPQ "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038474 [exp] 309 / 2e-109 AT3G52300 297 / 7e-105 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2) Lus10023492 [exp] 286 / 3e-100 AT3G52300 295 / 8e-104 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2) Lus10040374 [exp] 285 / 5e-100 AT3G52300 293 / 3e-103 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G043800 [exp] 281 / 2e-98 AT3G52300 291 / 3e-102 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2) Potri.010G217800 [exp] 274 / 1e-95 AT3G52300 281 / 1e-98 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05873 [flax] [poplar] Mt_ATP-synt_D ATP synthase D chain, mitochondrial (ATP5H)
Representative CDS sequence Show only first row Show all	>Lus10023337 pacid=23180977 polypeptide=Lus10023337 locus=Lus10023337.g ID=Lus10023337.BGIv1.0 annot-version=v1.0 ATGAGCGGAGCTGCGAAGAAGGTTACCGATGTGGCGTTCAAGGCTTCAAAGAACATCGATTGGGAAGGCATGGCCAAGCTCATAGTCTCCGACGAGGCTC GCAAGGAATTCGCCAATCTCCGCCGCGCCTTCGACGAAGTTAACTCCCAACTCCAGACCAAGTTTAGCCAGGAACCCGAACCCATAGACTGGGAATATTA CCGAAAGGGGATTGGCCCACGCTTGGTTGATATGTACAAGGAAGCATATGACAGCATTGAGATACCCAAGTATGAAGACAAAGTCACCCCAGAGTACAAA CCAAAGTTTGATCAACTGATGGTGGAATTGAAAGAAGCAGAGCAAAAGTCGCTGAAAGAATCCGAAAGATTGGAGAAGGAAGTTGCTGAAGTGCAAGAGT TAAAGAAAAAGATCAGCACAATGACAGCCGATGAGTACTTTGAGAAGCACCCTGAGCTTAAGAAGAAGTTCGACGACGAAATCCGCAATGACTACTGGGG TTACTGA
AA sequence Show only first row Show all	>Lus10023337 pacid=23180977 polypeptide=Lus10023337 locus=Lus10023337.g ID=Lus10023337.BGIv1.0 annot-version=v1.0 MSGAAKKVTDVAFKASKNIDWEGMAKLIVSDEARKEFANLRRAFDEVNSQLQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKYEDKVTPEYK PKFDQLMVELKEAEQKSLKESERLEKEVAEVQELKKKISTMTADEYFEKHPELKKKFDDEIRNDYWGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10023337 [exp]	0	1
AT3G05545			RING/U-box superfamily protein...		Lus10029886 [exp]	2.8	0.8174
AT1G08480		SDH6	succinate dehydrogenase 6, unk...		Lus10008448 [exp]	3.0	0.8776
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Lus10021604 [exp]	3.9	0.8469
AT5G14230			unknown protein		Lus10022339 [exp]	5.0	0.7996
AT3G63170			Chalcone-flavanone isomerase f...		Lus10022045 [exp]	5.2	0.7891
AT1G12310			Calcium-binding EF-hand family...		Lus10004332 [exp]	5.5	0.8499
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10035094 [exp]	7.3	0.7927
AT5G23290		PFD5, PDF5	prefoldin 5 (.1)		Lus10010176 [exp]	11.2	0.7695
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10034424 [exp]	12.0	0.7776
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10040534 [exp]	12.4	0.7758

Compare expression of checked genes

Lus10023337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.