Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45600 316 / 2e-109 TET3 tetraspanin3 (.1) AT5G60220 290 / 1e-98 TET4 tetraspanin4 (.1) AT2G23810 197 / 1e-62 TET8 tetraspanin8 (.1) AT4G28050 186 / 1e-58 TET7 tetraspanin7 (.1) AT4G30430 178 / 2e-55 TET9 tetraspanin9 (.1) AT5G46700 165 / 2e-50 TRN2, TET1 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) AT3G12090 165 / 4e-50 TET6 tetraspanin6 (.1) AT1G18520 160 / 2e-48 TET11 tetraspanin11 (.1) AT4G23410 154 / 5e-46 TET5 tetraspanin5 (.1) AT2G19580 143 / 6e-42 TET2 tetraspanin2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038473 [exp] 432 / 2e-155 AT3G45600 446 / 9e-160 tetraspanin3 (.1) Lus10023216 [exp] 214 / 1e-69 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10008891 [exp] 214 / 2e-69 AT2G23810 377 / 5e-133 tetraspanin8 (.1) Lus10019965 [exp] 213 / 3e-69 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10015494 [exp] 207 / 7e-67 AT2G23810 370 / 2e-130 tetraspanin8 (.1) Lus10017336 [exp] 163 / 1e-49 AT5G46700 389 / 5e-138 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Lus10008563 [exp] 156 / 5e-47 AT2G19580 411 / 1e-146 tetraspanin2 (.1) Lus10041411 [exp] 149 / 4e-45 AT4G23410 257 / 5e-87 tetraspanin5 (.1) Lus10001668 [exp] 151 / 5e-45 AT5G46700 384 / 8e-136 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G015100 [exp] 355 / 4e-125 AT3G45600 388 / 7e-137 tetraspanin3 (.1) Potri.006G177900 [exp] 196 / 1e-62 AT2G23810 317 / 4e-109 tetraspanin8 (.1) Potri.008G041600 [exp] 190 / 5e-60 AT3G12090 397 / 2e-140 tetraspanin6 (.1) Potri.010G220300 [exp] 189 / 1e-59 AT3G12090 399 / 2e-141 tetraspanin6 (.1) Potri.018G099800 [exp] 188 / 3e-59 AT2G23810 322 / 3e-111 tetraspanin8 (.1) Potri.015G055700 [exp] 165 / 3e-50 AT1G18520 196 / 6e-62 tetraspanin11 (.1) Potri.003G093000 [exp] 162 / 4e-49 AT5G46700 369 / 4e-130 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.006G150400 [exp] 160 / 2e-48 AT2G19580 367 / 5e-129 tetraspanin2 (.1) Potri.001G141400 [exp] 157 / 3e-47 AT5G46700 367 / 3e-129 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.001G107200 [exp] 134 / 3e-38 AT1G63260 416 / 1e-148 tetraspanin10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0347 [flax] [poplar] Tetraspannin PF00335 [flax] [poplar] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Lus10023338 pacid=23180934 polypeptide=Lus10023338 locus=Lus10023338.g ID=Lus10023338.BGIv1.0 annot-version=v1.0 ATGGTCGTCTCCTTGGCCGGATTCGCCGGCGCCTGCTACAGGAACACCATGCTGATGTGGATCTACCTATTCGTCATGTTCTTCGTCCTCGCCGCGCTCG TCGGGTTCATCATCTTCGCCTACTCGGTCACTGACAAAGGCGCCGGCCGGCCGTTGTTGAATCGGAACTACTTCGATTACTACCTACAGGACTACTCCGG CTGGCTCGCGGAGAGAGTCGCCAGTAATGGATACTGGATCAAGATCGCCTCCTGTGTGAGGGATTCGAAAGTGTGTGCTAAGATGGGGGTGAACTTCAAT GGAATCCCTGAGTCTGCTGATATGTTCTATCGCAGGAGGCTTAGCTCCATCCAGTCGGGATGTTGCAAGCCGCCCACAGAATGCGGATTCTCTTACGTAA ACGAGACCGTATGGGCATCGTCGGGAGGTGTGGTGTACAACCCGGACTGCAACACATGGAACAACGATCGGCAGGAACTGTGCTACTCTTGCAACTCCTG CAAGGCCGGTGTTCTAGCCAGCATCAAGAAGAGCTGGAGGAAGGTTTCCGTGATCAACATTGTTGTGTTGATCATCCTGGTCATCGTCTATGTGATAGGC TGCGCCGCCTTTAGGAACAATCGGCGGATGGATAACGACGAAGCTTATGGTGAAGCAAGGATGACAAAGGCGCGACCTAGTAGTCTGCATTTTTAG
AA sequence Show only first row Show all	>Lus10023338 pacid=23180934 polypeptide=Lus10023338 locus=Lus10023338.g ID=Lus10023338.BGIv1.0 annot-version=v1.0 MVVSLAGFAGACYRNTMLMWIYLFVMFFVLAALVGFIIFAYSVTDKGAGRPLLNRNYFDYYLQDYSGWLAERVASNGYWIKIASCVRDSKVCAKMGVNFN GIPESADMFYRRRLSSIQSGCCKPPTECGFSYVNETVWASSGGVVYNPDCNTWNNDRQELCYSCNSCKAGVLASIKKSWRKVSVINIVVLIILVIVYVIG CAAFRNNRRMDNDEAYGEARMTKARPSSLHF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45600		TET3	tetraspanin3 (.1)		Lus10023338 [exp]	0	1
AT4G22790			MATE efflux family protein (.1...		Lus10007006 [exp]	2.4	0.8229
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10038744 [exp]	3.0	0.8659
AT1G24560			unknown protein		Lus10038257 [exp]	4.9	0.8502
AT2G33990		IQD9	IQ-domain 9 (.1)		Lus10025425 [exp]	5.3	0.8292
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Lus10029454 [exp]	5.7	0.8544
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10000184 [exp]	7.7	0.7835
AT5G03470		ATB' ALPHA, ATB...	Protein phosphatase 2A regulat...		Lus10023920 [exp]	9.9	0.8091
AT5G53140			Protein phosphatase 2C family ...		Lus10019012 [exp]	11.0	0.8272
AT2G15860			unknown protein		Lus10023852 [exp]	11.3	0.7913
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10036392 [exp]	11.6	0.7923

Compare expression of checked genes

Lus10023338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.