Gene [FLAX] | FIBexDB

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT3G45640	566 / 0	ATMAPK3, ATMPK3	mitogen-activated protein kinase 3 (.1)
AT2G43790	519 / 0	ATMAPK6, MAPK6, ATMPK6	MAP kinase 6 (.1)
AT4G01370	487 / 3e-173	ATMPK4	MAP kinase 4 (.1)
AT3G59790	477 / 8e-169	ATMPK10	MAP kinase 10 (.1)
AT4G11330	471 / 7e-167	ATMPK5	MAP kinase 5 (.1)
AT1G07880	464 / 4e-164	ATMPK13	Protein kinase superfamily protein (.1.2)
AT1G01560	461 / 7e-163	ATMPK11	MAP kinase 11 (.1.2)
AT2G46070	454 / 5e-160	MAPK12, ATMPK12	mitogen-activated protein kinase 12 (.1.2)
AT2G18170	379 / 7e-131	ATMPK7	MAP kinase 7 (.1)
AT1G10210	369 / 8e-127	ATMPK1	mitogen-activated protein kinase 1 (.1.2)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10038472 [exp]	693 / 0	AT3G45640	535 / 0.0	mitogen-activated protein kinase 3 (.1)
Lus10036136 [exp]	608 / 0	AT3G45640	654 / 0.0	mitogen-activated protein kinase 3 (.1)
Lus10018127 [exp]	606 / 0	AT3G45640	652 / 0.0	mitogen-activated protein kinase 3 (.1)
Lus10027091 [exp]	539 / 0	AT2G43790	692 / 0.0	MAP kinase 6 (.1)
Lus10008339 [exp]	538 / 0	AT2G43790	691 / 0.0	MAP kinase 6 (.1)
Lus10007921 [exp]	482 / 4e-171	AT4G01370	689 / 0.0	MAP kinase 4 (.1)
Lus10017518 [exp]	481 / 2e-170	AT4G01370	632 / 0.0	MAP kinase 4 (.1)
Lus10028765 [exp]	477 / 4e-169	AT4G01370	630 / 0.0	MAP kinase 4 (.1)
Lus10036384 [exp]	473 / 2e-167	AT4G01370	681 / 0.0	MAP kinase 4 (.1)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.009G066100 [exp]	576 / 0	AT3G45640	652 / 0.0	mitogen-activated protein kinase 3 (.1)
Potri.001G271700 [exp]	570 / 0	AT3G45640	640 / 0.0	mitogen-activated protein kinase 3 (.1)
Potri.007G139800 [exp]	538 / 0	AT2G43790	684 / 0.0	MAP kinase 6 (.1)
Potri.017G010200 [exp]	534 / 0	AT2G43790	677 / 0.0	MAP kinase 6 (.1)
Potri.002G162500 [exp]	486 / 8e-173	AT4G01370	684 / 0.0	MAP kinase 4 (.1)
Potri.003G131800 [exp]	480 / 4e-170	AT4G01370	656 / 0.0	MAP kinase 4 (.1)
Potri.014G088500 [exp]	478 / 9e-170	AT4G01370	676 / 0.0	MAP kinase 4 (.1)
Potri.001G099900 [exp]	477 / 5e-169	AT4G01370	657 / 0.0	MAP kinase 4 (.1)
Potri.002G032100 [exp]	395 / 1e-136	AT1G59580	624 / 0.0	mitogen-activated protein kinase homolog 2 (.1.2)
Potri.005G231100 [exp]	393 / 6e-136	AT1G59580	617 / 0.0	mitogen-activated protein kinase homolog 2 (.1.2)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0016 [flax] [poplar]	PKinase	PF00069 [flax] [poplar]	Pkinase	Protein kinase domain

Representative CDS sequence

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>Lus10023339 pacid=23180956 polypeptide=Lus10023339 locus=Lus10023339.g ID=Lus10023339.BGIv1.0 annot-version=v1.0

ATGGCAGGAAATGCGAACACCAACGGCGGATCAAGCAGTCAGAATCCCGATTCTCCGGCGACTCCTACTCACGGTGGCCGGTTCGTGCAGTATAACATCT

CCGGTCACCAGTTTGACATTACTCCAAAATACCGGCCTCCGGTCGTGGCCATAGGCCGAGGAGCCTATGGCTTCGTGTGTTCGATGGAGAATTTTGAAAC

TAGCGAGAAGGTGGCTATGAAAAAGATAGCCAACGCTTTCGACAACAAACTATACGCCAAACGCACGCTACGTGAGATCATGCTGCTACGCCATCTGAAT

CACGAAAATGTGATTGGGATCAGAGACGTGGTTCCTCCGCCGGTGAGGAGAGAATTTAACGACGTGTACATAGCAACTGAGCTCATGAACATGGATATGT

CCCATATTGTACGTTCGAACCAGAGCTTAACTGAGGAGCATAATAAGTATTTCTTGTACCAGTTACTTAGAGGATTGAAGTACATACATTCTGCTAATGT

GATTCACAGAGATCTAAAACCCAGCAACATTCTTCTGAACGGAACTTGTGACTTGAAGATCTGCGACTTCGGCATGGCCCGATCTGCACAGGAGACGAAC

GAGGCCATGACCGAATACGTCGTGACGAGATGGTACCGGGCGCCCGAGCTTCTCCTCAACTCTCACGATTACACTTCAGCTATAGACGTCTGGTCCGTTG

GCTGCATTTTCATGGAGCTTCTGAACAGAAAGCCATTGTTCCCTGGCAAGGATCATTGCCATCAGATGCGGTTGATCACCGAGTTAATCGGTACGCCAAC

TGAATCTGAGTTAGGGTTTGTGAAGAACGAGAATGCTAGAACGTATATCCAGCAGCTCACCCCACGTCCTCAAAAGCAATTAGCCGACGTTTTTCACGAC

GTCGACCCTTTGGCCATCGATCTCGTCGGTAAAATGCTGACATTCGATCCTACGAACAGAATAACTGTTGAGGAAGCAATAGCACACCCGTATCTCGAAA

AATTGCACGACCCGACCGACGAGCCGGTGTGCGAAAAGCGGTTCTCTTTCGATTTCGAGCAACAAAATTTGGATGAGGAGCAGATCAAGGAGTTGATTTA

CAGGGAGGCGTTGGATTTTAATCCAAGCTATGCATAG

AA sequence

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>Lus10023339 pacid=23180956 polypeptide=Lus10023339 locus=Lus10023339.g ID=Lus10023339.BGIv1.0 annot-version=v1.0

MAGNANTNGGSSSQNPDSPATPTHGGRFVQYNISGHQFDITPKYRPPVVAIGRGAYGFVCSMENFETSEKVAMKKIANAFDNKLYAKRTLREIMLLRHLN

HENVIGIRDVVPPPVRREFNDVYIATELMNMDMSHIVRSNQSLTEEHNKYFLYQLLRGLKYIHSANVIHRDLKPSNILLNGTCDLKICDFGMARSAQETN

EAMTEYVVTRWYRAPELLLNSHDYTSAIDVWSVGCIFMELLNRKPLFPGKDHCHQMRLITELIGTPTESELGFVKNENARTYIQQLTPRPQKQLADVFHD

VDPLAIDLVGKMLTFDPTNRITVEEAIAHPYLEKLHDPTDEPVCEKRFSFDFEQQNLDEEQIKELIYREALDFNPSYA

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Lus10023339 [exp]	0	1

Lus10023339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Lus10023339 [FLAX]

DESeq2's median of ratios [FLAX]

Coexpressed genes

Lus10023339 coexpression network