Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49900 1130 / 0 Beta-glucosidase, GBA2 type family protein (.1) AT1G33700 986 / 0 Beta-glucosidase, GBA2 type family protein (.1.2) AT4G10060 929 / 0 Beta-glucosidase, GBA2 type family protein (.1) AT3G24180 744 / 0 Beta-glucosidase, GBA2 type family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038471 [exp] 1716 / 0 AT5G49900 1201 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10002950 [exp] 1014 / 0 AT5G49900 1216 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10003517 [exp] 997 / 0 AT5G49900 1191 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10000757 [exp] 744 / 0 AT3G24180 1485 / 0.0 Beta-glucosidase, GBA2 type family protein (.1.2) Lus10038469 [exp] 360 / 7e-118 AT5G49900 223 / 1e-69 Beta-glucosidase, GBA2 type family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G227200 [exp] 1207 / 0 AT5G49900 1284 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Potri.003G003400 [exp] 1204 / 0 AT5G49900 1298 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Potri.019G072800 [exp] 1087 / 0 AT5G49900 1219 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Potri.003G178000 [exp] 765 / 0 AT3G24180 1485 / 0.0 Beta-glucosidase, GBA2 type family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF04685 [flax] [poplar] DUF608 Glycosyl-hydrolase family 116, catalytic region CL0103 [flax] [poplar] Gal_mutarotase PF12215 [flax] [poplar] Glyco_hydr_116N beta-glucosidase 2, glycosyl-hydrolase family 116 N-term
Representative CDS sequence Show only first row Show all	>Lus10023340 pacid=23181064 polypeptide=Lus10023340 locus=Lus10023340.g ID=Lus10023340.BGIv1.0 annot-version=v1.0 ATGGTGGAGAATGGTGATCGCAACAATGTGGCTTCGAAAAAGTCCGAGAACAAGGTTGATCCTGGGAAACCTGCAATCCTTACTTGGCAGAGGAAGCTGA ACACTCAGCTCACGCGCCTTAGACAGTTCCGTTTGACGCTTAATGAGACAGTTCAGCTGATGCCTATGTGTTTTCGACTGGAGCGTTATAAACGCGAAGA AATTGCGAAAGGCCGGGATGGCTTTTTCCTTAATCCATTTGGTAAGCGGCACATAACATCCAGTCATGGAGTTCCCCTAGGTGGCATAGGTTCTGGAAGC ATTGGAAGAAGTTTCAGAGGCGAATTCCAGCGCTGGCAACTGTCCCCTGGAATGTGCGAAGGAGCACCAGTTTTGGCTAATCAGTTTTCTGCTTTTATAT CTCGTTCCAATGGCCGAAAGTACTCCAGTGTGCTGTGTCCAAGGGCCCCTGATATGATAATAGAACTTACTATAGTTTTCCTCAGAGATCCTGCAGTTTC TGGGATTGGATCGTGGGACTGGAAGCTCAAGGGTGATAGATCTACGTACGATGCTTTATACCCGAGGGCTTGGACCACGTATGAGGGAGAACCTGATCCA CAACTAAAAATTGTTTGTCGTCAACTTTCTCCCGTAATTCCTCATAATTACAAGGAGAGTAGCTATCCGGTTGCTGTTTTCACTTTCACACTCCACAATA CAGGACAAACTGCTGCTGATGCATCTCTCCTTTTTACATGGGCGAACTCCGTGGGAGGTGATTCTGGATCCACTGGCCAACACGTAAATTCCACTGAAAC GAGGGAGGACGGCGTACAATGCATACTTCTGCATCACAGGACAGCAAAAGAGTCCCCAATGACATTTGCAATTGCTGCACAAGAGAGCACGGGTGTCAGA GTTTCCAAGTGCCCTCGCTTTGTGATATCAGGCAACTTCGAAGGAGGGGTATCCGCGAAAGACATGTGGGATCACATGAAAAAGCATGGAATGTTTGACA ACCTTAAGCGTGCTACTGAAGTTTCTCAGCCTTCGGAGCCGGGATCGTCCATTGGGGCAGGCATTGCTGCCACTGTAACACTTCAACCCAATGAAGTTCG TACAGTGACATTCTCCTTGGCGTGGGATTGCCCTGAAGCCAATTTTCAGGGTGGAAGGACCTACCACAGGCGTTATACAAAATTCTTTGGGGCTCATGGG AATGCTGCCGCAAACATCGCACACGAAGCGATTCTAAATCATAGTCATTGGGAGTCCCAGATAGAAGAGTGGCAAAGACCAATACTTGAAGATAAAACAT TTCCAGAATGTGTGGACAGGCATGTAGAACTCAGAGAAGTCTTCTATGGATCACCTCCAGTCCACAGCTTAGAGACACTCGGTGTTACAAAATTATCGCT CGATAATCCAGGAGGCATTCTAGAAACGAACCGAAGTGTTACTGCTAGTTCGATTCTGGAGAGTATGGCTTCGAAACTACACCAGATTCATACTCCGGTA GCATCCAATTCAGCTATCGGGACTAATTTGCTCGACGAAGGAGAAGAAAACATCGGTCAGTTTTTGTACCTCGAAGGGATCGAGTACCTGATGTGGAACA CATACGATGTTCACTTCTACTCATCTTTCGCGCTTGTTATGCTGTTTCCGAAACTCCAGCTCAGCGTTCAAAGAGACTTTGCGGCAGCAGTTATCATGCA CGATCCCTCGAAAATGATAGTACTTCATGATGGCCGGTGGGTCTCAAGAAAGGCTCTTGGCGCGGTTCCCCACGACATTGGACTCCACGATCCGTGGTTT GAAGTAAACGCGTATTGTCTTTACAATACGGACCGATGGAAAGACTTGAACTTGAAATTCGTGCTCCAAGTGTACAGAGATGTGGTAGCCACAGGTGATA AGAAGTTTGCGAAAGCTGTTTGGCCCTCGGTTTATATGGCCGTGGCGTTCATGGATCAGTTCGATAAGGATCGAGATGGGATGATCGAAAATGAAGGCTT TCCTGATCAGACGTACGATACTTGGACGGTATCCGGTGTTAGTGCGTACACCGGAGGGTTGTGGGTCGCTGCTTTGCAGGCGGCATCAGCATTGGCAGGT TTAGTAGGGGATAAAGGTTCTCAAGTGCATTTCTGGTTAAAATTTCAGAAGGCGAAATCGGTATATGGAAAATTATGGAACGGGTCCTACTTCGATTACG ACAACAGTGGTAGTCGAAACAGTAAATCGATTCAAGCTGATCAGCTCGCTGGGCAGTGGTATGCACAAGCGTGTGGGCTTCTCCCAATAGTTGACAAGGC GAAGGCACAAAGTGCACTGGAGAAAGTGTTCAACTTCAATGTGATGAAGGTGAAAGACGGTAAGCGTGGGGCCCTGAACGGAATGCTACCCGATGGTACC GTCGACATGTTGAACACACAGTCGAGAGAGATATGGTCCGGGGTGACGTACGCAGTTTCAGCATCGATGATTCAAGAAGGGCTGACCGATATGGGATTCA AGACTGCTAGCGGAGTTTACGAAACTTCATGGTCCGAAAGAGGACTCGGGTATGGGTTTCAGACTCCGGAAGCCTGGAACACCAACGATCAGTACCGATC GCTGTGCTACATGAGGCCGTTGGCTATTTGGGCGATGCAGTGGGAGTTCTCAAGAAAGAAACTTGCGCAACAAGAAATGAAGGTGCCAGTTATGGAAGAT TACCCGTCTGCAGAGGATGCCGGATTCGCCAAGGTGGCTCGATTCCTCAGGTTACCGGAGTCGAATCAGTCGAAAAGCCTGTTCCAGACAGTGTACGACT ATGCTTCCAAGAAACTGGGATATTGA
AA sequence Show only first row Show all	>Lus10023340 pacid=23181064 polypeptide=Lus10023340 locus=Lus10023340.g ID=Lus10023340.BGIv1.0 annot-version=v1.0 MVENGDRNNVASKKSENKVDPGKPAILTWQRKLNTQLTRLRQFRLTLNETVQLMPMCFRLERYKREEIAKGRDGFFLNPFGKRHITSSHGVPLGGIGSGS IGRSFRGEFQRWQLSPGMCEGAPVLANQFSAFISRSNGRKYSSVLCPRAPDMIIELTIVFLRDPAVSGIGSWDWKLKGDRSTYDALYPRAWTTYEGEPDP QLKIVCRQLSPVIPHNYKESSYPVAVFTFTLHNTGQTAADASLLFTWANSVGGDSGSTGQHVNSTETREDGVQCILLHHRTAKESPMTFAIAAQESTGVR VSKCPRFVISGNFEGGVSAKDMWDHMKKHGMFDNLKRATEVSQPSEPGSSIGAGIAATVTLQPNEVRTVTFSLAWDCPEANFQGGRTYHRRYTKFFGAHG NAAANIAHEAILNHSHWESQIEEWQRPILEDKTFPECVDRHVELREVFYGSPPVHSLETLGVTKLSLDNPGGILETNRSVTASSILESMASKLHQIHTPV ASNSAIGTNLLDEGEENIGQFLYLEGIEYLMWNTYDVHFYSSFALVMLFPKLQLSVQRDFAAAVIMHDPSKMIVLHDGRWVSRKALGAVPHDIGLHDPWF EVNAYCLYNTDRWKDLNLKFVLQVYRDVVATGDKKFAKAVWPSVYMAVAFMDQFDKDRDGMIENEGFPDQTYDTWTVSGVSAYTGGLWVAALQAASALAG LVGDKGSQVHFWLKFQKAKSVYGKLWNGSYFDYDNSGSRNSKSIQADQLAGQWYAQACGLLPIVDKAKAQSALEKVFNFNVMKVKDGKRGALNGMLPDGT VDMLNTQSREIWSGVTYAVSASMIQEGLTDMGFKTASGVYETSWSERGLGYGFQTPEAWNTNDQYRSLCYMRPLAIWAMQWEFSRKKLAQQEMKVPVMED YPSAEDAGFAKVARFLRLPESNQSKSLFQTVYDYASKKLGY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10023340 [exp]	0	1
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027891 [exp]	3.2	1.0000
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10036896 [exp]	3.2	1.0000
					Lus10002313 [exp]	5.5	1.0000
AT5G56790			Protein kinase superfamily pro...		Lus10000773 [exp]	6.3	1.0000
					Lus10003831 [exp]	6.5	1.0000
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10036470 [exp]	6.7	1.0000
AT5G64790			O-Glycosyl hydrolases family 1...		Lus10005788 [exp]	6.9	1.0000
					Lus10006010 [exp]	7.3	1.0000
					Lus10029558 [exp]	7.5	1.0000
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10003438 [exp]	7.7	1.0000

Compare expression of checked genes

Lus10023340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.