Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28560 470 / 8e-164 ATRAD51B, RAD51B DNA repair (Rad51) family protein (.1), DNA repair (Rad51) family protein (.2), DNA repair (Rad51) family protein (.3), DNA repair (Rad51) family protein (.4) AT5G20850 92 / 3e-20 ATRAD51 RAS associated with diabetes protein 51 (.1) AT2G45280 91 / 1e-19 ATRAD51C RAS associated with diabetes protein 51C (.1.2) AT5G57450 89 / 2e-19 ATXRCC3, XRCC3 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2) AT1G07745 76 / 7e-15 SSN1, ATRAD51D, RAD51D SUPPRESOR OF SNI1, homolog of RAD51 D (.1.2) AT3G22880 71 / 4e-13 ARLIM15, ATDMC1 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) AT5G02910 49 / 7e-06 F-box/RNI-like superfamily protein (.1.2) AT5G02930 45 / 0.0001 F-box/RNI-like superfamily protein (.1) AT5G53840 45 / 0.0001 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G49610 44 / 0.0002 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038467 [exp] 651 / 0 AT2G28560 430 / 2e-151 DNA repair (Rad51) family protein (.1), DNA repair (Rad51) family protein (.2), DNA repair (Rad51) family protein (.3), DNA repair (Rad51) family protein (.4) Lus10038470 [exp] 150 / 3e-41 ND / Lus10038468 [exp] 150 / 3e-41 ND / Lus10027258 [exp] 139 / 7e-37 AT4G03220 74 / 9e-15 Protein with RNI-like/FBD-like domains (.1) Lus10038967 [exp] 138 / 1e-34 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10006513 [exp] 124 / 6e-31 AT5G02930 80 / 3e-16 F-box/RNI-like superfamily protein (.1) Lus10040452 [exp] 109 / 4e-26 AT5G02930 59 / 3e-09 F-box/RNI-like superfamily protein (.1) Lus10027244 [exp] 107 / 6e-25 AT5G02930 69 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10024702 [exp] 102 / 7e-24 AT5G02930 70 / 5e-13 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G068100 [exp] 102 / 4e-24 AT2G45280 398 / 2e-139 RAS associated with diabetes protein 51C (.1.2) Potri.018G093100 [exp] 88 / 5e-19 AT5G57450 312 / 1e-106 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2) Potri.006G135200 [exp] 88 / 8e-19 AT5G20850 622 / 0.0 RAS associated with diabetes protein 51 (.1) Potri.010G081500 [exp] 74 / 3e-14 AT3G22880 613 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) Potri.015G002100 [exp] 58 / 7e-09 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.011G104200 [exp] 55 / 6e-08 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 54 / 2e-07 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 51 / 1e-06 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.015G011200 [exp] 50 / 3e-06 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF08423 [flax] [poplar] Rad51 Rad51
Representative CDS sequence Show only first row Show all	>Lus10023341 pacid=23180939 polypeptide=Lus10023341 locus=Lus10023341.g ID=Lus10023341.BGIv1.0 annot-version=v1.0 ATGGCGAACAATCTCATAAGCGAAATGGGTCTCCCCAACTCCATAGCCAACATCTTCACAGCTCGCAATCTCAGAACAGCTAAGGATGCATTGTCTTTAC CGGAGTTCGATTTAATGGAGCTGCTAGGCGTTGGATTGGCGGAAGTGATCTTCGCAGTTGAGTGCATCAGTGAGGCCGTTTCTCCTCCGCATCAAACCGC ACTATTGCTAATGAAACAACGTTTGAATGATGAACATTGCGCTGGCCATCTTCCAACTGGACTGAAAGGATTGGATGATGCTTTGTGTGGCGGAATTCCA TTTGGTGTCTTGACAGAGCTTGTTGGTCCAGCCGGGATCGGAAAAACACAGTTTTGTTTGAAGATTTCGTTGTTGGCTGCAATGCCTATACCATATGGAG GTTTAGATGGTCATGTTATATATATTGATGTCGAATCCAAATTCAGTTCAAGGAGGATGCTAGAAATTGGAGCAACATGTTTCCCAGAAATATTTAAAAT GAATTCACTGGCAAAGGAGATGGCTGGCAGGATTCTTGTTTTACGGCCTGGATCACTATCGGAATTTACTGAGAGTTTGCCACAGATCCAGGCTTCAGTC CTGCAGGGTCAAGTGAAGTTGCTAGTTATAGATAGCATGGCAGCTCTTGTTTCAGGGGAATCTGATCAGAGAGGTCCTCGAAACCAGGCATTGGGTTCGC ATATTTGTTTCCTCAAGTCGCTTGCTGAATTCTCGAGAATACCTGTAGTGGTGACGAATCAAGTCAGATCCCAAAGTCGAGATGGGGTCTGCCAACATCA CTTTCAAGATTCAATACACAGCAAAGCTGTGAGTTTAGACGGTGCTGAAATAAATGATTCTCATCTTGTTGCTGCTTTGGGAGTCCACTGGGCTCATGCC GTGACCATTCGCCTCATACTGGAAACAAATTTAGGTCAAAGGTTTCTGAAGGTGTCAAAATCTCCGATATCACCGCCTCTGGCATTCCCCTTTAGCATAG AATCATCAGGGATATCACTGCTGGATCATACTGGAAGAGAAGTTAGTGGCCATGAAATAAATACAATTCACTGTCAAGAGAACTCTGCTCATCAGTCATC ACTAAGCAAACCTTACTCCGTCGGCGAAATCATTCACTACTCCGCCGTAGCAGCCGCCACCGATCAAGCAAGCAGCAGTCATACGATTTCCATGAGCCTT AGAACGAACGCTGTATTTTGCATCAAATCCTGTCCTTGGTCGACACTCTCGTCTGTTCGAACCAGTATTCTGTCTAGGAGGTGGAGATCCGTATGGAAAT ACGTTCCGGTTCTCACTTTCAGTGGGAGCTCGGTGGAGCACTCCATGGAACAAGTTCTATCACTCCGTTCTGACAGTAGTAGCGTCACAAGGGTTACATT GGACTCGTGGGCAAAACAGAGGAAGGATCTGATTGATAGGTTGATCAAATACGCTGCTTCCCATGGCGTTCAAGAGCTATCAATTTCTACCCAATTCGTC CAATCCCCCAGTGTTTTTGGATCGGTATACCCCTGTTATCGATCTCTGAAAGTTCTCGAGTTGCAGCTAATGGATATAGAACAAATTGATGTTGGGATTG TGGTCCCGTTGCCAACTGCTTGA
AA sequence Show only first row Show all	>Lus10023341 pacid=23180939 polypeptide=Lus10023341 locus=Lus10023341.g ID=Lus10023341.BGIv1.0 annot-version=v1.0 MANNLISEMGLPNSIANIFTARNLRTAKDALSLPEFDLMELLGVGLAEVIFAVECISEAVSPPHQTALLLMKQRLNDEHCAGHLPTGLKGLDDALCGGIP FGVLTELVGPAGIGKTQFCLKISLLAAMPIPYGGLDGHVIYIDVESKFSSRRMLEIGATCFPEIFKMNSLAKEMAGRILVLRPGSLSEFTESLPQIQASV LQGQVKLLVIDSMAALVSGESDQRGPRNQALGSHICFLKSLAEFSRIPVVVTNQVRSQSRDGVCQHHFQDSIHSKAVSLDGAEINDSHLVAALGVHWAHA VTIRLILETNLGQRFLKVSKSPISPPLAFPFSIESSGISLLDHTGREVSGHEINTIHCQENSAHQSSLSKPYSVGEIIHYSAVAAATDQASSSHTISMSL RTNAVFCIKSCPWSTLSSVRTSILSRRWRSVWKYVPVLTFSGSSVEHSMEQVLSLRSDSSSVTRVTLDSWAKQRKDLIDRLIKYAASHGVQELSISTQFV QSPSVFGSVYPCYRSLKVLELQLMDIEQIDVGIVVPLPTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28560		ATRAD51B, RAD51...	DNA repair (Rad51) family prot...		Lus10023341 [exp]	0	1
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Lus10002430 [exp]	1.7	0.9205
AT5G48940			Leucine-rich repeat transmembr...		Lus10023677 [exp]	4.7	0.9197
AT3G53850			Uncharacterised protein family...		Lus10024355 [exp]	5.0	0.8979
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10002571 [exp]	6.7	0.9057
AT1G49710		ATFUT12, FUCTB,...	fucosyltransferase 12 (.1)		Lus10002401 [exp]	9.2	0.8827
AT1G44760			Adenine nucleotide alpha hydro...		Lus10025644 [exp]	9.2	0.8766
AT2G14050		MCM9	minichromosome maintenance 9 (...		Lus10023780 [exp]	9.5	0.8934
AT5G20850		ATRAD51	RAS associated with diabetes p...		Lus10039928 [exp]	11.3	0.8907
AT4G37250			Leucine-rich repeat protein ki...		Lus10019315 [exp]	12.5	0.8454
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010986 [exp]	14.4	0.8761

Compare expression of checked genes

Lus10023341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.