Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60370 157 / 4e-47 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038466 [exp] 293 / 2e-100 AT5G60370 348 / 7e-118 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0236 [flax] [poplar] PDDEXK PF09810 [flax] [poplar] Exo5 Exonuclease V - a 5' deoxyribonuclease
Representative CDS sequence Show only first row Show all	>Lus10023342 pacid=23181049 polypeptide=Lus10023342 locus=Lus10023342.g ID=Lus10023342.BGIv1.0 annot-version=v1.0 ATGTGCTACAAGCATATATGGGACTCTCTTGTCGCTGATAACTTCCCTGCCGAGCAGTTCTACGATTTCTTTTCCTTGAATCGCCATGCCATTTTGTGCC AAGAGATCAGGGAGACTGCTAAAGAAGCAGGTATCATTCCAGCTGCAGAGACCCTGGACGATATCGTTAGATACTTCAAAAACACAAGCTGTGTCTTACT CCCCGCCGATGACCGAATGTTACTAAGATATGAGCTGCAGAAGGACAACTCCCTGCTGTGTGAAGATGTGTTCATATATGAGTTTGATTGGGTGAAGAGT CAAATTCAAGCATCCTTGGAGTTCTGGTTTAGTAAGCGGGAAGCTGGATGCACTCCAGAGGATGAGCGCTGGAAATGTAGGTTCTGCCAGTTTGCAGACG TTTGCCCCACGAATCCCATGTTTGTTAAAGAAATGTAA
AA sequence Show only first row Show all	>Lus10023342 pacid=23181049 polypeptide=Lus10023342 locus=Lus10023342.g ID=Lus10023342.BGIv1.0 annot-version=v1.0 MCYKHIWDSLVADNFPAEQFYDFFSLNRHAILCQEIRETAKEAGIIPAAETLDDIVRYFKNTSCVLLPADDRMLLRYELQKDNSLLCEDVFIYEFDWVKS QIQASLEFWFSKREAGCTPEDERWKCRFCQFADVCPTNPMFVKEM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60370			unknown protein		Lus10023342 [exp]	0	1
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10001534 [exp]	1.0	0.9862
AT2G42800		AtRLP29	receptor like protein 29 (.1)		Lus10031383 [exp]	3.2	0.9673
AT4G38870			F-box and associated interacti...		Lus10034309 [exp]	4.4	0.9170
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10019106 [exp]	5.7	0.9638
AT2G42800		AtRLP29	receptor like protein 29 (.1)		Lus10010946 [exp]	7.9	0.9364
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10019105 [exp]	8.5	0.9468
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Lus10034881 [exp]	8.5	0.9283
AT5G45650			subtilase family protein (.1)		Lus10020458 [exp]	9.6	0.9019
					Lus10006591 [exp]	11.2	0.8680
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10011033 [exp]	11.2	0.9161

Compare expression of checked genes

Lus10023342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.