Plant FIBer expression Database

Lus10023343 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G60370 103 / 2e-25 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038466
[exp]
207 / 9e-65 AT5G60370 348 / 7e-118 unknown protein
Poplar homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0236 PDDEXK PF09810 Exo5 Exonuclease V - a 5' deoxyribonuclease
Representative CDS sequence
>Lus10023343 pacid=23181085 polypeptide=Lus10023343 locus=Lus10023343.g ID=Lus10023343.BGIv1.0 annot-version=v1.0
ATGCCAAGCAACAAAATGACTAAGCACCATGACCATGTTCTACGACATTTGCCTTTGTATTATACCCGCCTATTTTATTGGCGATCATCAAATCTCAGTC
AGAAGAACACTCGAACAGAATTGATTTTGAACCGCCCTATTTTTTTAAATTGGAGTTTCGCAGTTCATAGTTCAGGTAAAACCTTTCTTATTCAGTTCCC
CGCTGCCCAGCATCCGACTGAATCCTCGTCGCCGTCCGTCCGTGGACAGCAAACAATGACTCACTCCTCTTCTCCATCCTCAACTCCCCTTCAAGATCCC
AACTTTAACGTCTTCACTCCTTCTAACTCCACCATTTCCGGAATTGCCATTGAGATCGTCTCTGATGAAGAAATGGCCTTCTACGAAGCAGCAGCCGCCA
TGGCTGTCACCCACTCCTCATCTTTTTCTTCTTCTTCTTCTTCCTCCTCCAAGTCCTCCGTCTCGACTTCCTCCCCCTCCATAGACATTGAAGATTCCGC
TACTCTCAACAAGAAGAACCCAGTCTCCCAATCCTTGTTTCACACGTTCAGGAAGAACCAGGCTTTGTACGTCACGGATATCACTGCCGCAGAGTGGTGC
GAGAAGCAAATGGAGTTTGTTCTTCGCGTGGGAAAAAGAAGAAGTACTGAAGCAATGAAAGCAGGCAGTGCTCGCCATTTGAAGCTGGAACAAGAGGTTG
TGACGAAAGTTGAAGTTCAGGTGGAATCAATTGAAGATTCATGGGCTCTCAAGTTTCTAAATTTCATCACTTGTGTAAACCAATTGTTATTCCAAGGTCT
AACCCGGGAGCTTCAGGTGTATTAA
AA sequence
>Lus10023343 pacid=23181085 polypeptide=Lus10023343 locus=Lus10023343.g ID=Lus10023343.BGIv1.0 annot-version=v1.0
MPSNKMTKHHDHVLRHLPLYYTRLFYWRSSNLSQKNTRTELILNRPIFLNWSFAVHSSGKTFLIQFPAAQHPTESSSPSVRGQQTMTHSSSPSSTPLQDP
NFNVFTPSNSTISGIAIEIVSDEEMAFYEAAAAMAVTHSSSFSSSSSSSSKSSVSTSSPSIDIEDSATLNKKNPVSQSLFHTFRKNQALYVTDITAAEWC
EKQMEFVLRVGKRRSTEAMKAGSARHLKLEQEVVTKVEVQVESIEDSWALKFLNFITCVNQLLFQGLTRELQVY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G60370 unknown protein Lus10023343
[exp]
0 1
AT4G32050 neurochondrin family protein (... Lus10001536
[exp]
1.0 0.9280
AT5G27640 ATTIF3B1, ATEIF... EUKARYOTIC TRANSLATION INITIAT... Lus10016562
[exp]
2.0 0.9100
AT5G58130 ROS3 REPRESSOR OF SILENCING 3, RNA-... Lus10040568
[exp]
2.4 0.9256
AT4G02900 ERD (early-responsive to dehyd... Lus10000660
[exp]
2.6 0.8829
AT4G17140 pleckstrin homology (PH) domai... Lus10006816
[exp]
3.0 0.8668
AT2G32000 DNA topoisomerase, type IA, co... Lus10021692
[exp]
3.2 0.8656
AT5G58130 ROS3 REPRESSOR OF SILENCING 3, RNA-... Lus10040584
[exp]
3.5 0.8912
AT3G24495 ATMSH7, MSH7, M... MUTS HOMOLOG 6-2, ARABIDOPSIS ... Lus10033095
[exp]
4.0 0.8731
AT3G19210 ATRAD54, CHR25 homolog of RAD54 (.1.2) Lus10014047
[exp]
4.2 0.9257
AT1G27460 NPGR1 no pollen germination related ... Lus10018679
[exp]
5.5 0.8577

Lus10023343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.