Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60410 841 / 0 ATSIZ1, SIZ1 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) AT5G41580 45 / 0.0002 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038464 [exp] 1363 / 0 AT5G60410 1006 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Lus10036123 [exp] 1009 / 0 AT5G60410 913 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Lus10011634 [exp] 952 / 0 AT5G60410 847 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G015000 [exp] 984 / 0 AT5G60410 1148 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Potri.004G210200 [exp] 980 / 0 AT5G60410 1146 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Potri.008G042300 [exp] 635 / 0 AT5G60410 775 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Potri.010G219600 [exp] 616 / 0 AT5G60410 732 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Potri.003G133000 [exp] 46 / 0.0001 AT5G41580 466 / 1e-151 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0306 [flax] [poplar] HeH PF02037 [flax] [poplar] SAP SAP domain CL0229 [flax] [poplar] RING PF02891 [flax] [poplar] zf-MIZ MIZ/SP-RING zinc finger
Representative CDS sequence Show only first row Show all	>Lus10023344 pacid=23180988 polypeptide=Lus10023344 locus=Lus10023344.g ID=Lus10023344.BGIv1.0 annot-version=v1.0 ATGGATTTGGTGAACAGCTGCAAGGAAAAGCTGGTTTATTTCCGGATAAAGGAGCTCAAGGATGTATTGACTCAGTTAGGGCTTTCAAAGCAGGGGAAGA AGCAGGACCTAGTGGATCGTATATTGTCAGTGTTCTCTGATGACCAAGCTTCGAATGTGTGGCCAAAGAGGGGAGTTGTTGGAAAGGAAGAGGCAGCAAA ACTGGTTGATGACGTTTACAGGAAGATGCAGGTTTCTGGTACTGATTTAGCATCAAAGGGGCAGAGCGTTTTGAGTAGTAGCAGTGCTAAAATTAAAGGA GAACCGGAAGACCCTTTTCATTGTGATGTAAAAGTTCGTTGTCCATGTGGAAGCACATTGGAAACAGAGTCAATGATTAAGTGTGAGGAACCAAGATGCG AGGTTTGGCAACATATTGGTTGTGTTATACTTGCTGAAAAACCCATGGAAGGCAGTCCCCTAGTTCCCGAGGTGTTTTACTGTGAGATCTGTCGACTGAA CCGATCGGACCCCTTTTGGGTTACAATTGCTCATTCACTATATCCTGTGAAGCTGGTCACAACCAATATCCCAACTGATGGAAACTCATGTTCAGTATGC TTCAGTGCTAATCCAGTTCAGAGTGTGCAGAAGTCGTTCCACCTGACAAGGGCAGATAAGGACTTATTGGCCAAGCCAGACATTGACGTACAGGTATGGT GCATGCTTTTGAATGACAAAGTTATATTCAGGATGCAGTGGCCACAATATGCTGATTTACAAGTTAATGGTGTACCTATTCGTGTAATTAATCGACCTGG TTCACAACTGCTCGGGGCAAATGGTCGTGATGATGGCTCTATTATAACACCATGCTCAAAAGATGGGATCAATAAGATATCATTAACTGGGTGTGATGCC CGGATTTTCTGCTTGGGCGTGAGGATTGTGAAGCGACGTACACTTCAGCAGATACTTGGGTTGATACCTATTGAATCTGATGGTGAGCGTTTTGAGGACG CACTTGCTCGTGTTTGTCGTTGTGTTGGAGGGGGAGCTGCAACAGATGATGCTGATAGTGACAGTGATTTAGAAGTTGTTGCAGACTCTATCCCTGTCAA TCTTCGCTGTCCAATGAGTGGCTCAAGAATAAAAGTTGCTGGAAGATTTAAACCTTGTGTTCACATGGGCTGTTTTGACCTTGATTGGCAGTGTCCCATT TGTCTCAAGAACTATTCTTTGGAGAATGTTATCATTGATCCTTATTTCAATCGCATCACCACTAAGATGAGGTACTTTGGTGAGGATATTACGGAGCTTG AGGTGAGGCCTGATGGTTCATGGCGCGTTAAAACTAGAACTGATGCTGAGCGCAGAGAAGTTGGAGAACTATCACAATGGCACAATGCTGATGGCACTCC GTGTGTACCAAAGGATGAGTTTCAGACGAAAGCAGAAACAGGGAAGCAGATAAAGCAGGAAGATATTTTAGAAGGTCATGCTGCTAATGGCTTGAAACTT GGGATTAAAAAGAATTATAGTGGGTATTGGCAAGCCAGCAAGCCAGAGGATATGGATACCTCTTCTTCAGATAACCGTTTGCTGAAGGTTGAAACCCTTG ACCAGAAAGTTATGCCTAGGAGTAGCAGTGCTACTGCCAGTGGTCGTGCAGGTGAAGATCCAAGTGTGAATCAGGATGGTGGTGGAAACTTTAACTTCAC TAATAGTGGAATGGAACTTGATACGTTAGCTCGCAACATTGTTCCCACATATGGGTTTGGTGAGCGAACTATTTCTGCTCCAGTGGGGGATGCAGAGGTT ATTGTTCTTAGTGATTCAGACGATGATATTCTCGTGTCCTCTGGTACTGGCTTGAACAATAACCAAAATGACGATGGGGCTGGTTTCTCGGCCATGCACT CTGGAGTTCCAGAACCGTGTGGCGAGAGTCCCAATCTTGGTGCCGCTGATTGGGAAAATGATGAATTTGCAATACCCATCTGGCCATTGCAGGGTGGCCC TGGTTTCCCGTTATTTAGTTCAGAAGACTCGGATCCCGTGGTGGATTTGCACCATGGTCCTATGAACTGTACAACATCAATGAATGGCTACAGTTTGGCT CCCCAGACGCATACTAATTTGGTCCCAGCATCTACTTTGGGTAGATCTGATGCAAATGATGGTTTGGTTGATAATCCTTTGTCAATTTTCGAGGAAGATC CTTCTCTGCAGCTGTTTCTTCCAACCAGGCCGTCGGATTCTTCGATTCATTCCAATCTGAGAGATCAGGTTGATGTTTCTAATGGTGTTCGTTCTGAGGA CTGGATCTCTCTCAGCCTTGGCGGTGCTGGTGGCCGCGGTCACGGTGAATCTGCTCATCGTGCAAATGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGTAA
AA sequence Show only first row Show all	>Lus10023344 pacid=23180988 polypeptide=Lus10023344 locus=Lus10023344.g ID=Lus10023344.BGIv1.0 annot-version=v1.0 MDLVNSCKEKLVYFRIKELKDVLTQLGLSKQGKKQDLVDRILSVFSDDQASNVWPKRGVVGKEEAAKLVDDVYRKMQVSGTDLASKGQSVLSSSSAKIKG EPEDPFHCDVKVRCPCGSTLETESMIKCEEPRCEVWQHIGCVILAEKPMEGSPLVPEVFYCEICRLNRSDPFWVTIAHSLYPVKLVTTNIPTDGNSCSVC FSANPVQSVQKSFHLTRADKDLLAKPDIDVQVWCMLLNDKVIFRMQWPQYADLQVNGVPIRVINRPGSQLLGANGRDDGSIITPCSKDGINKISLTGCDA RIFCLGVRIVKRRTLQQILGLIPIESDGERFEDALARVCRCVGGGAATDDADSDSDLEVVADSIPVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDWQCPI CLKNYSLENVIIDPYFNRITTKMRYFGEDITELEVRPDGSWRVKTRTDAERREVGELSQWHNADGTPCVPKDEFQTKAETGKQIKQEDILEGHAANGLKL GIKKNYSGYWQASKPEDMDTSSSDNRLLKVETLDQKVMPRSSSATASGRAGEDPSVNQDGGGNFNFTNSGMELDTLARNIVPTYGFGERTISAPVGDAEV IVLSDSDDDILVSSGTGLNNNQNDDGAGFSAMHSGVPEPCGESPNLGAADWENDEFAIPIWPLQGGPGFPLFSSEDSDPVVDLHHGPMNCTTSMNGYSLA PQTHTNLVPASTLGRSDANDGLVDNPLSIFEEDPSLQLFLPTRPSDSSIHSNLRDQVDVSNGVRSEDWISLSLGGAGGRGHGESAHRANGXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10023344 [exp]	0	1
AT2G20320			DENN (AEX-3) domain-containing...		Lus10000499 [exp]	3.0	0.9417
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Lus10013300 [exp]	4.0	0.9612
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023900 [exp]	5.1	0.9636
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Lus10038530 [exp]	5.9	0.9432
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Lus10027998 [exp]	7.6	0.9338
AT1G27752			Ubiquitin system component Cue...		Lus10007753 [exp]	13.0	0.9201
AT1G10280			Core-2/I-branching beta-1,6-N-...		Lus10024468 [exp]	14.4	0.9158
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10006231 [exp]	15.9	0.9203
AT1G50480		THFS	10-formyltetrahydrofolate synt...		Lus10013741 [exp]	17.1	0.9442
AT2G41380			S-adenosyl-L-methionine-depend...		Lus10001155 [exp]	22.8	0.9427

Compare expression of checked genes

Lus10023344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.