Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12290 659 / 0 DGS1 dgd1 suppressor 1 (.1) AT1G07970 615 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038461 [exp] 1102 / 0 AT5G12290 723 / 0.0 dgd1 suppressor 1 (.1) Lus10038462 [exp] 1066 / 0 AT1G07970 740 / 0.0 unknown protein Lus10038463 [exp] 119 / 3e-31 ND 33 / 0.008
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G014900 [exp] 758 / 0 AT1G07970 703 / 0.0 unknown protein Potri.009G022200 [exp] 721 / 0 AT5G12290 660 / 0.0 dgd1 suppressor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04689 [flax] [poplar] S1FA DNA binding protein S1FA PF09786 [flax] [poplar] CytochromB561_N Cytochrome B561, N terminal PF08637 [flax] [poplar] NCA2 ATP synthase regulation protein NCA2
Representative CDS sequence Show only first row Show all	>Lus10023345 pacid=23181023 polypeptide=Lus10023345 locus=Lus10023345.g ID=Lus10023345.BGIv1.0 annot-version=v1.0 ATGGAGGAAAACGGCGCCGGCGAGGCAGAAGTGCACGGCGTAAAACACCTAGTTTCCTTCTACTCCAACCAAGTATGGAACCGCCTCACCGCTTTCTTTC CTTCCGACTCCAATTTTCTCGGCAGAATCGCAAGCATACGCCGCCAGACAGTTCGTCGTCACGATCTCTTCCTCCCACTTCCTCTATCTTCGCACATTCT CGACTCCTACTTGATGAAACCAGGATCATCTCGGGTGTATGATGTTCTTCAAGATATACTGGAGAGAAGTTACAATAATCTTCACAGTATTCAGAAGAAT CTGTTGTTTTGGGAATGTAGAGCTGAGGGATCAGAACGAGAAAAGTTGTACTTCATGTTGTTGGAAAGAGGACCGAGGGCTTTCATTGATGGAACAGTTC AGTTAGTGCGTGAGACCTTGAAGGATGGTTTCTCCACACAGCAACTAGCGCTATCTGCATCAGCTTTCATAAATGAGAGATTGGTTGTCTTGAGAACCTT GAGATGTGCCATTGCTGCTTTCTTGGCTGAGGTTTACAGGGAAGTTGATAAACGTGGAAAAGACTTGACAGAAGATCCAGATAAGGCATTTCCCTCGCTG TTATTCACTATTGACAATTTGTTTTCAACTTTAGAGGCATCCATTGGCCATCTACATGCCATGCGCGAGGCTGGTTCCTCTGTGGATGGAAGCTATTCAC TCCCTCTACTGTTTGAGAAACTTCCAGAGGTTAATCAAGATGGTTCTGAGTGGACTGATTGTGAGATAACAGATGCCATCGGTGTGGTGTACAAAAATTT AGAGAAGCTGGACTCTTATTTGTCACTTGTGGTTGTCAAACATCAAAAGCCAAGGAAGTTAACTCAACACTGGATCCGTTATACCTGTGGTGCCATTGGC TTCTCGGTTTGTTCTATTTGGGTTCTTCGGCATAGTAGATTAATGGGAAGTTCTGATATTGACAATTGGATTCATGAAGCAAGGGATTCGATAGCTAGCT TCTATGAGGACCATGTTGAACAACCGATTTTGTCCATCAGAGATGAACTTTTCGATACATTCAGGAAGAGACATAAAGGAGTGATGGAAATCGAAGAAGT GCAGTTGACAGCTGGTTCTCTGCACAGGATGTTGTTGGCTTTCAGTGAGCAGACTCAGGGGGGAAGTTTCCCTGAGAATGCATCAGATCAGAAAATGCTA GAATTAGTGATGGGCAGGTATGAAAAAGAACTTGAACATCCAATTCATAATCTGGTAAAGGGAGAGCTAGCTCGTGCTTTGCTCATCCAGGTTCAAAAGC TAAAGTTAGACATCGAAACGGCTATGCTCGAGCTGGATCAGATCCTCAAGGCAAATGAGATCAACTTTGCCATTCTAGCAGCCTTACCAGCATTTGCACT CTCAGTTGTTCTGCTTATGTTATTAAGAGCCTGGATTAAACAGGACACTAGAGCTGAAGGAAGGGGGAGAATTGCTAGGCGTCACAGGAGGTTGCTTTTG GCGGAGGTGGAGAAAAGTATTATGCAGTACCAAATTTACCTGGATCACGGGCTGGGGACCGAGTCACAAAGCATGTTCGGTATGGTGTTGTACAGTCTGA ATCGCTTGTGCCTTGCAGTCGAGAGGCACGCGAAAGCAACTGGTGAATGGCGATTGTTGAGACAGGACATTATGGAACTAGGGAAACCAGGCTTGAAAAC CGAGTACAAGCTGCGAGTGACCTTGCGGATGGAGCGTGCTTACGAATGCTTGCTTCCTTCAACCACACGCATCTTCCAGCTGCGCTCCGGTGAACGTAGC TGCCAGTTCAGCTTTCCACTCCAGCACTCTGCAACGATGGAAGGGCGGTCATCTCCGCCGGCTAGCAAATCGGCAAAGTTCGCCGTCTATCAGAATCCCT CCTTGACTGCTGCCCTAGCCGCTTCCAGCCTTCAGCCGTCTAAATCCACGTTTCTGTATATAGTGTTGCTCTCCGTTGCCTCTGCTCTCGCTCTTTTCTC CATTGTTTCCAGGGAAAATGGGTTCATTGAAATGGTCGAAGTCAGCTTTTTCTCACGGCGGGCAGCTTATATATTTGCTAAGGTAGTGGAGGGTGTGGTT GGTGTTCTCTTCGTTGGATGTCTGTTTGGCCTTCTTAGAGTCATCTCCTGGAAAAGGGTTGGAAATGTTGCTAGTGTGCCAATGATAACTTCACCTGAAA CAAAGGACCTTCCAAAACTGACCAGCCGTCAACTGGGGTTTTTAGGTGTAAGGCCAAAAGTTGAAGCAATTCCAGTGGAGTATTCAAAAAAACCTCCAAA GTCTAAACCCACACCGGCGTCAGATTTGCTTGTTCCAATTCACCAACAAACGACTGGTTCTAATCTTAGGTCTCGTGTCACATCTGATAAATCAAGTCTT GGTAGTGGAAATAAGATGTCCTCTTTCGGCAGCCCATCCAAATCACAATCTTCTCCATCATCTATGTATCTTGTCCCACGGATCAGTTCACCACTACCGT CTGGACAATCTTCATCAGGCATGGATTCAGCTGTTTCAACTCCTTGGTCAAGTAAGAGGGCCTTCTCTGCGAAAGAGATAGTAACGGAAGAGGAACTTGA GAAGTTCTTGGCAGATGTTGATGCCAAATTTACTGAATCAGCAGGGAAACACACAACTCCACCCCCAACTGTTAGAGGTTTTGGCATACTGAGTCCTGGT AATGTTCCAAGTCCAACCAATACATCTGGAACTACAAGGAGTACACCCTTGAGACCAGTGAGGATGTCTCCTGGTTCCCAGAAGTTTGCCACTCCACCGA AGAAAGGAGAAGGAGAGCTCCCTCCGCCAATGTCCATGGAAGAGGCCATTGAAGCTTTCAAGCATTTGGGTATCTATCCACAAATAGAGCAGTGGCGTGA TCGCCTCAGACAGTGGTTTTCTTCAGTTCTCCTTGGCCTTTTAATTAACAAAATAGAAACCAGTCATATTCAGGTTATGCAAACAGCTGCGGAACTTGGG ATTGCAATAACAGTTAATCAAGTTGGAAACTCGGCAACCAGTGACACACCTGCTACTCTCTCTTCTATTGATGGGAAAGAATGGCAATCGGCATTCACGT TTGATGAAGATGGTCGTCTTCATCAACTTCGTGCTACTCTAGTTCATGCCATTGATGCTTCTGCACCCAAGTTTAATCAGTTCAATAAACAGCAATCTCC ACAGCCAAATCCTATGGCACCTGTTATGCAGAAATGTTTGGATGCCATAACAGAGCATCAAAAACTACGAGCATTAATGAAAGGAGATTGGGGTAAAGGT TTGCTACCTTATAGTAATGTCCGGGAAGATCACATGGTACAAAGAATTCGAGAACTTGCAGAAGGAACCTGCGTGAAGAATTTCGAGTATATCAGAACTG GAGAGGCGTATGATACAAAGAACAAGAAACAGACTCTGGATCTTCCGACTGATTCTCACTTACTATTGTATTTGTTTTGCGCCTTCCTCGAACACCCGAA GTGGATGCTCCATGTAGATCCAACTTCCCATGCAGGAGCTCAGTCTAGCAAAAACCCCTTGTTTTTGGGTGTCTTGCCGCCCAAGGAAAGGTTTCCGGAA AAGTACGTCGCTGTTGTTTCTGCTGTTCCTTCCACACTTCATCCTGGATCTTGCATACTTGTCATGGGGAAACAAAGCCCTCCAGTCTTCGCCTTGTATT GGGATAAGATGCAACAGTTCTCTCTCCAGGGAAGAACAGCTTTGTGGGATTCAATCATACTCATGTGCCATAGAATCAAGTTTGGCTATGGAAGTGTAGT CCGAGGAATGCATCTTGGTTCATCAGCTTTGAACATTCTTCCTGAGAAAGCCACGTTGCAGCTTGTAATAGCAGAAAAGCTCCATGAAAACAGCAGAATT TCTGGTGACAAACCAGAGGGAAAAAGCTCCATAGATCTTGAGGAGGATGCTATCAAATCAAAACAAGGAAGCCATTGTTGTTTCTATCCCATCATGGACC TCGACGAGTTCGTCAGCTGGACGCCCGAAAAGCCTAAGAAAACTTATTTCATCCGCAATGGACGTATGGGGAGGGACAAGAATGGGAAGATGATCATCAG GGAAAATGAAGACGATGTGCAGAGCAATAGCAGCAACAAACAAGGTATGGTCGTGTTCGGAATAGTGGTCGGATTACTGCTTCTCTTCGTGGTCGGCAAC TATCTTCTCTACAGTTACGCTACTCGGCAATCGAAGAATAGCAAGAAGATGATGATGGTTAAGAAAGCAGTCTCTAAGAAGAAGATGAAGCGTGAAAGGA TCAAACAAGGCATCTTTGTCCCTGGAGATTAA
AA sequence Show only first row Show all	>Lus10023345 pacid=23181023 polypeptide=Lus10023345 locus=Lus10023345.g ID=Lus10023345.BGIv1.0 annot-version=v1.0 MEENGAGEAEVHGVKHLVSFYSNQVWNRLTAFFPSDSNFLGRIASIRRQTVRRHDLFLPLPLSSHILDSYLMKPGSSRVYDVLQDILERSYNNLHSIQKN LLFWECRAEGSEREKLYFMLLERGPRAFIDGTVQLVRETLKDGFSTQQLALSASAFINERLVVLRTLRCAIAAFLAEVYREVDKRGKDLTEDPDKAFPSL LFTIDNLFSTLEASIGHLHAMREAGSSVDGSYSLPLLFEKLPEVNQDGSEWTDCEITDAIGVVYKNLEKLDSYLSLVVVKHQKPRKLTQHWIRYTCGAIG FSVCSIWVLRHSRLMGSSDIDNWIHEARDSIASFYEDHVEQPILSIRDELFDTFRKRHKGVMEIEEVQLTAGSLHRMLLAFSEQTQGGSFPENASDQKML ELVMGRYEKELEHPIHNLVKGELARALLIQVQKLKLDIETAMLELDQILKANEINFAILAALPAFALSVVLLMLLRAWIKQDTRAEGRGRIARRHRRLLL AEVEKSIMQYQIYLDHGLGTESQSMFGMVLYSLNRLCLAVERHAKATGEWRLLRQDIMELGKPGLKTEYKLRVTLRMERAYECLLPSTTRIFQLRSGERS CQFSFPLQHSATMEGRSSPPASKSAKFAVYQNPSLTAALAASSLQPSKSTFLYIVLLSVASALALFSIVSRENGFIEMVEVSFFSRRAAYIFAKVVEGVV GVLFVGCLFGLLRVISWKRVGNVASVPMITSPETKDLPKLTSRQLGFLGVRPKVEAIPVEYSKKPPKSKPTPASDLLVPIHQQTTGSNLRSRVTSDKSSL GSGNKMSSFGSPSKSQSSPSSMYLVPRISSPLPSGQSSSGMDSAVSTPWSSKRAFSAKEIVTEEELEKFLADVDAKFTESAGKHTTPPPTVRGFGILSPG NVPSPTNTSGTTRSTPLRPVRMSPGSQKFATPPKKGEGELPPPMSMEEAIEAFKHLGIYPQIEQWRDRLRQWFSSVLLGLLINKIETSHIQVMQTAAELG IAITVNQVGNSATSDTPATLSSIDGKEWQSAFTFDEDGRLHQLRATLVHAIDASAPKFNQFNKQQSPQPNPMAPVMQKCLDAITEHQKLRALMKGDWGKG LLPYSNVREDHMVQRIRELAEGTCVKNFEYIRTGEAYDTKNKKQTLDLPTDSHLLLYLFCAFLEHPKWMLHVDPTSHAGAQSSKNPLFLGVLPPKERFPE KYVAVVSAVPSTLHPGSCILVMGKQSPPVFALYWDKMQQFSLQGRTALWDSIILMCHRIKFGYGSVVRGMHLGSSALNILPEKATLQLVIAEKLHENSRI SGDKPEGKSSIDLEEDAIKSKQGSHCCFYPIMDLDEFVSWTPEKPKKTYFIRNGRMGRDKNGKMIIRENEDDVQSNSSNKQGMVVFGIVVGLLLLFVVGN YLLYSYATRQSKNSKKMMMVKKAVSKKKMKRERIKQGIFVPGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07970			unknown protein		Lus10023345 [exp]	0	1
AT1G78770		APC6	anaphase promoting complex 6 (...		Lus10030525 [exp]	2.6	0.9274
AT3G10180			P-loop containing nucleoside t...		Lus10012103 [exp]	3.9	0.9500
AT5G42970		FUS4, EMB134, C...	FUSCA 8, FUSCA 4, EMBRYO DEFEC...		Lus10010816 [exp]	4.6	0.9088
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Lus10041587 [exp]	5.5	0.9421
AT2G33340		MAC3B	MOS4-associated complex 3B (....		Lus10023728 [exp]	6.7	0.9338
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Lus10021705 [exp]	6.9	0.9286
AT2G04235			unknown protein		Lus10016054 [exp]	7.9	0.9472
AT5G63960		EMB2780	DNA binding;nucleotide binding...		Lus10033513 [exp]	9.8	0.9340
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10000970 [exp]	15.4	0.8725
AT3G09080			Transducin/WD40 repeat-like su...		Lus10017180 [exp]	16.7	0.8988

Compare expression of checked genes

Lus10023345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.