Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12180 756 / 0 CPK17 calcium-dependent protein kinase 17 (.1) AT5G19360 751 / 0 CPK34 calcium-dependent protein kinase 34 (.1) AT4G23650 605 / 0 CDPK6, CPK3 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) AT1G50700 570 / 0 CPK33 calcium-dependent protein kinase 33 (.1) AT3G20410 569 / 0 CPK9 calmodulin-domain protein kinase 9 (.1) AT4G04720 566 / 0 CPK21 calcium-dependent protein kinase 21 (.1) AT4G21940 558 / 0 CPK15 calcium-dependent protein kinase 15 (.1.2) AT5G04870 550 / 0 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT3G10660 550 / 0 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT1G61950 541 / 0 CPK19 calcium-dependent protein kinase 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038460 [exp] 842 / 0 AT5G12180 916 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10036050 [exp] 788 / 0 AT5G19360 908 / 0.0 calcium-dependent protein kinase 34 (.1) Lus10000889 [exp] 787 / 0 AT5G12180 907 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10017537 [exp] 601 / 0 AT4G23650 803 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Lus10021531 [exp] 572 / 0 AT3G20410 831 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10040071 [exp] 567 / 0 AT3G20410 825 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10017251 [exp] 561 / 0 AT1G76040 807 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10032640 [exp] 549 / 0 AT3G20410 790 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10008958 [exp] 540 / 0 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G274700 [exp] 762 / 0 AT5G12180 909 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.009G069200 [exp] 755 / 0 AT5G12180 914 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.001G097400 [exp] 605 / 0 AT4G23650 781 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.003G134000 [exp] 602 / 0 AT4G23650 776 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.004G015500 [exp] 555 / 0 AT4G04720 797 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.011G003400 [exp] 555 / 0 AT4G04720 815 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.010G244800 [exp] 547 / 0 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.006G200600 [exp] 543 / 0 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1) Potri.008G014700 [exp] 542 / 0 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1) Potri.016G066700 [exp] 539 / 0 AT3G10660 834 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10023346 pacid=23181002 polypeptide=Lus10023346 locus=Lus10023346.g ID=Lus10023346.BGIv1.0 annot-version=v1.0 ATGGGAAATTGTTGTTCCAGGGGAAACGAAGGAAATGAAGATCAAAAGGGAGGAGATCAAAGAAGCAACAACGGCGTCGGAGGAGACACCACATCCTCCG GCGCCGGCGGCGGGGGACCCAACTCCAAAACGACACCGCCTTCACCAGGCCCACCCCACGCATCCCCAAAACCCTCGAAAAACGCGCCGATCGGACCGGT CCTCGGCCGGCCAATGGAGGACGTGAAATCGATCTACTCCATCGGGAAAGAGCTGGGCAGGGGTCAATTCGGGGTCACACATCTCTGCACCCAGAAAGCC AACGGCCAGCAATACGCCTGCAAGACGATCGCGAAGAGGAAGCTGGTGAACAAGGAGGATTTGGAGGACGTTAGAAGAGAGGTTCAGATTATGCACCATT TGACCGGTCAGCCGAATATCGTCGAGCTGAAAGGTGCTTATGAGGATAAGCATTCTGTGCATTTGGTTATGGAGCTTTGCGCCGGCGGGGAGCTTTTTGA TCGGATCATTGCGAAAGGGCATTATACGGAGAGAGCGGCGGCGAGTTTGTTGAGGACGATTGTTGAGATTGTTTATACTTGCCATACGATGGGTGTTATT CATAGAGATCTTAAGCCTGAGAATTTCTTGCTTCTGAATAAGGATGAGAGCTCTCCTCTTAAGGCTACTGATTTTGGCTTGTCCGTCTTCTACAAGCCAG GAGAGGTGTTCAAAGACATTGTTGGAAGTGCTTATTACATAGCACCAGAAGTGTTGAAAAGGAAATATGGACCAGAAGCAGATATTTGGAGCATTGGGGT TATGTTGTACATTCTTCTATGTGGTGTTCCTCCTTTCTGGGCTGAATCCGAGCATGGGATTTTCAATGCGATTCTCCGTGGAAGTGTCGATTTTACAAGC GATCCATGGCCTGCGATTTCACCCCAGGCTAAAGATCTCGTCCGAAAAATGCTCAACTCGGATCCGAAACAAAGGCTATCGGCTTCTCAAGTTCTAAACC ATCCATGGATCAAAGAAGATGGTGAAGCTCCTGATATTCCTCTTGACAATGCTGTCCTAGGCAGACTCAAACAATTCAAAGCAATGAACTTGTTCAAGAA AGTTGCTCTAAGGGCAGATGCAGATGGAAATGGAATAATCGACTATGATGAGTTCATCACAGCAACAATGCACTTGAATAGGATGGATAGAGAAGAGCAT CTATACACAGCTTTCCAACATTTTGATAAAGACAACAGCGGATTCATCACAACAGAAGAGCTTCAACAAGCTCTTCGTGATTTCGGCATCAACGACGAAA AAGAGTTGAAGGATATCCTTGCCGAAGTCGATAGCGATAATGATGGTCGAATCAACTACGACGAATTTGTAGCGATGATGAGGAAAGGGAACCCAGAAGC CAACCCGAAAAAAAGACGTGATACTACGTTTACTTGA
AA sequence Show only first row Show all	>Lus10023346 pacid=23181002 polypeptide=Lus10023346 locus=Lus10023346.g ID=Lus10023346.BGIv1.0 annot-version=v1.0 MGNCCSRGNEGNEDQKGGDQRSNNGVGGDTTSSGAGGGGPNSKTTPPSPGPPHASPKPSKNAPIGPVLGRPMEDVKSIYSIGKELGRGQFGVTHLCTQKA NGQQYACKTIAKRKLVNKEDLEDVRREVQIMHHLTGQPNIVELKGAYEDKHSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVEIVYTCHTMGVI HRDLKPENFLLLNKDESSPLKATDFGLSVFYKPGEVFKDIVGSAYYIAPEVLKRKYGPEADIWSIGVMLYILLCGVPPFWAESEHGIFNAILRGSVDFTS DPWPAISPQAKDLVRKMLNSDPKQRLSASQVLNHPWIKEDGEAPDIPLDNAVLGRLKQFKAMNLFKKVALRADADGNGIIDYDEFITATMHLNRMDREEH LYTAFQHFDKDNSGFITTEELQQALRDFGINDEKELKDILAEVDSDNDGRINYDEFVAMMRKGNPEANPKKRRDTTFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12180		CPK17	calcium-dependent protein kina...		Lus10023346 [exp]	0	1
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10030013 [exp]	1.4	0.7830
AT5G10750			Protein of unknown function (D...		Lus10020102 [exp]	4.5	0.7697
AT1G70740			Protein kinase superfamily pro...		Lus10003711 [exp]	5.7	0.7576
AT5G15070			Phosphoglycerate mutase-like f...		Lus10005263 [exp]	10.4	0.7727
AT5G24090		ATCHIA	chitinase A (.1)		Lus10023535 [exp]	10.4	0.7691
AT5G65550			UDP-Glycosyltransferase superf...		Lus10028863 [exp]	17.1	0.7740
AT5G12000			Protein kinase protein with ad...		Lus10006021 [exp]	21.4	0.7645
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10022670 [exp]	22.0	0.7425
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10003263 [exp]	22.9	0.6840
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Lus10008756 [exp]	24.2	0.7438

Compare expression of checked genes

Lus10023346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.