Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20880 82 / 2e-17 ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) (.1) AT5G44350 59 / 1e-09 ethylene-responsive nuclear protein -related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038459 [exp] 228 / 4e-74 AT4G20880 92 / 2e-21 ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G464300 [exp] 84 / 5e-18 AT4G20880 85 / 1e-17 ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) (.1) Potri.011G162400 [exp] 83 / 1e-17 AT4G20880 75 / 3e-14 ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023347 pacid=23180911 polypeptide=Lus10023347 locus=Lus10023347.g ID=Lus10023347.BGIv1.0 annot-version=v1.0 ATGCCTCTCCCATGGAAGAAGTCCAAAGTCGCCACCATTTCCAGACTCGTGACCGATCTCCACCACCATTCCCCCAAACGCGGCAACTCCCTAGTCGTCC AGACTGGTTTCCCCGCCTCCCTCGTCGATCTCTTCTACAAGAACCGCGACCGCTTGAAGAAACCCTACTCCTCCTCCAGGAGCAAGAACAGGAAGCGCAA TCAATCCGACGAGGAGTTTGTGATTAGCGATCCTGTACTCACGGATCCGATCGACGGCGGCGCTGAATCCAGCGGAATCGACGAGATTCAAGAGGTGGTG GAGGAAAAGGTCAGCAGCAGCAGCAACGAGAGAGTGCAGCAGATCCACAAGGATAGAACTAGGAAGAGGATGATGAAGAAATTGGTGAAGAGACTGCGGC ATCGAAAGAAGGGTACTTTAACGGCTGGAGGAGACAAGGAGGATGAAATCGTGGCCGGCGGCGCAATCGTGGCCCCCCCCGCCGTAAAAAGGCCCAGCGA GCGGAGTGGATTAGGCGAATCCGGGAATCGGAAAGCGAAGTTGTTGTTGATCTCTGATGTACTTGAGAATCGGATGAACAGTGAATGTGAAGAAGACGGA ATACTGATTGCAGATGATGATGATGATGATGACGATGATGGAGAGTGTTGTTTAACCAGTGGAGAATTGCAGTCTGAATCATCAGAGATTAACAACTCGA GAAGAAGCGGTGGTAATACTAATTCGGGTTGTGTGATTCTTCTCCTGGCTGTTCTTGTTGGACTTGCAGGGGGTAGATTGCTAGCACTTATGATCACGAT TGTTGCATGTTTGATGCTCAAGTTTGCTGGGAGACGGAGAAGTTCCAGATAG
AA sequence Show only first row Show all	>Lus10023347 pacid=23180911 polypeptide=Lus10023347 locus=Lus10023347.g ID=Lus10023347.BGIv1.0 annot-version=v1.0 MPLPWKKSKVATISRLVTDLHHHSPKRGNSLVVQTGFPASLVDLFYKNRDRLKKPYSSSRSKNRKRNQSDEEFVISDPVLTDPIDGGAESSGIDEIQEVV EEKVSSSSNERVQQIHKDRTRKRMMKKLVKRLRHRKKGTLTAGGDKEDEIVAGGAIVAPPAVKRPSERSGLGESGNRKAKLLLISDVLENRMNSECEEDG ILIADDDDDDDDDGECCLTSGELQSESSEINNSRRSGGNTNSGCVILLLAVLVGLAGGRLLALMITIVACLMLKFAGRRRSSR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20880			ethylene-responsive nuclear pr...		Lus10023347 [exp]	0	1
AT1G47410			unknown protein		Lus10006481 [exp]	1.4	0.9235
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10014132 [exp]	3.5	0.9168
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10033702 [exp]	4.5	0.9142
					Lus10011339 [exp]	5.5	0.9025
AT1G56110		NOP56	homolog of nucleolar protein N...		Lus10040032 [exp]	7.3	0.8918
AT1G18590		SOT17, ATSOT17,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Lus10017878 [exp]	8.2	0.8935
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10016616 [exp]	9.2	0.8997
AT4G32750			unknown protein		Lus10022138 [exp]	10.2	0.9085
					Lus10020006 [exp]	10.2	0.9068
					Lus10029856 [exp]	12.0	0.8472

Compare expression of checked genes

Lus10023347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.