Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05950 197 / 1e-63 RmlC-like cupins superfamily protein (.1) AT5G39160 187 / 1e-59 RmlC-like cupins superfamily protein (.1.2.3) AT5G39130 187 / 1e-59 RmlC-like cupins superfamily protein (.1) AT5G39190 186 / 1e-59 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39110 185 / 5e-59 RmlC-like cupins superfamily protein (.1) AT5G39120 183 / 3e-58 RmlC-like cupins superfamily protein (.1) AT5G39150 183 / 3e-58 RmlC-like cupins superfamily protein (.1) AT5G39180 183 / 3e-58 RmlC-like cupins superfamily protein (.1) AT5G38940 181 / 2e-57 RmlC-like cupins superfamily protein (.1) AT5G38960 180 / 4e-57 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023350 [exp] 322 / 5e-113 AT1G02335 195 / 7e-63 germin-like protein subfamily 2 member 2 precursor (.1) Lus10038457 [exp] 316 / 1e-110 AT5G38960 192 / 8e-62 RmlC-like cupins superfamily protein (.1) Lus10035278 [exp] 236 / 6e-79 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10030048 [exp] 233 / 9e-78 AT3G05950 249 / 3e-84 RmlC-like cupins superfamily protein (.1) Lus10034254 [exp] 229 / 3e-76 AT5G39160 251 / 6e-85 RmlC-like cupins superfamily protein (.1.2.3) Lus10035279 [exp] 226 / 6e-75 AT5G39160 244 / 2e-82 RmlC-like cupins superfamily protein (.1.2.3) Lus10026962 [exp] 225 / 1e-74 AT3G05950 251 / 6e-85 RmlC-like cupins superfamily protein (.1) Lus10030047 [exp] 223 / 6e-74 AT3G05950 256 / 7e-87 RmlC-like cupins superfamily protein (.1) Lus10032016 [exp] 223 / 7e-74 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G163800 [exp] 219 / 1e-72 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.011G162932 [exp] 216 / 4e-71 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163200 [exp] 214 / 1e-70 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163300 [exp] 214 / 2e-70 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163216 [exp] 214 / 2e-70 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.001G465100 [exp] 205 / 5e-67 AT5G39160 253 / 8e-86 RmlC-like cupins superfamily protein (.1.2.3) Potri.013G052300 [exp] 199 / 2e-64 AT5G39110 281 / 2e-96 RmlC-like cupins superfamily protein (.1) Potri.011G162200 [exp] 199 / 2e-64 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.013G052100 [exp] 198 / 4e-64 AT5G39110 285 / 2e-98 RmlC-like cupins superfamily protein (.1) Potri.019G026400 [exp] 195 / 5e-63 AT3G05950 288 / 2e-99 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10023349 pacid=23181060 polypeptide=Lus10023349 locus=Lus10023349.g ID=Lus10023349.BGIv1.0 annot-version=v1.0 ATGGATTCCAAGTTTGTTCTGCTCCTTGTGGTTCTTGCATTAGCCTCTTCTGTAGCTCTGGCCACCGACGGAAGTCCGCTTCAGGATTTCTGCGTTGCCG ACAGAAAAGGAACCCCGATGAACGGGTTCGCGTGCAAGCCACCAAAGTCAGTACGGGCAAAAGACTTCAGTCACCATGGGCTGGACAAACCTGCCAACTC CTCGAACAGACACGGTTGCGTAGCCTCGCCCTACACCGTTCTTCAAATCCCGGGTCTCAATACCCTAGGCATCTCCATGGTCCGTCTCGACTTTGTCAAA GGCGGAGTTAATCCACCCCACCTACACCCTAGAGCCACCGAGATGATGGTCGTGATGCAGGGCACCATTGAAGCAGGGTTCATCACCTCATTGCCCGAAA AGCGCGTCATATCCAAGGTCCTGAAGACCGGGGAGGCGTTTGTGTTCCCACCCGCGCTGATCCATTACCAGAAGAACGTTGGGGAAGGCCCCGCTTACGC TCTCGCAGCTCTCAACAGCCAGAACCCTGGTACCCTGCCGGCCTTAGCCTGCGTGTTTGGGTCCAAACCGAAGCTTTCGGTTGATATTCTGACTAAGTCT CTTGACGTTGATGCGAATACCGTTACTCACCTCCTCAGCAAATTCAAATGA
AA sequence Show only first row Show all	>Lus10023349 pacid=23181060 polypeptide=Lus10023349 locus=Lus10023349.g ID=Lus10023349.BGIv1.0 annot-version=v1.0 MDSKFVLLLVVLALASSVALATDGSPLQDFCVADRKGTPMNGFACKPPKSVRAKDFSHHGLDKPANSSNRHGCVASPYTVLQIPGLNTLGISMVRLDFVK GGVNPPHLHPRATEMMVVMQGTIEAGFITSLPEKRVISKVLKTGEAFVFPPALIHYQKNVGEGPAYALAALNSQNPGTLPALACVFGSKPKLSVDILTKS LDVDANTVTHLLSKFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05950			RmlC-like cupins superfamily p...		Lus10023349 [exp]	0	1

Compare expression of checked genes

Lus10023349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.