Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02335 188 / 2e-60 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT5G38960 184 / 2e-58 RmlC-like cupins superfamily protein (.1) AT3G62020 183 / 3e-58 GLP10 germin-like protein 10 (.1.2) AT5G38940 183 / 4e-58 RmlC-like cupins superfamily protein (.1) AT5G38930 182 / 1e-57 RmlC-like cupins superfamily protein (.1) AT3G04200 181 / 2e-57 RmlC-like cupins superfamily protein (.1) AT1G09560 181 / 3e-57 GLP5 germin-like protein 5 (.1) AT5G39160 179 / 7e-57 RmlC-like cupins superfamily protein (.1.2.3) AT3G05950 179 / 1e-56 RmlC-like cupins superfamily protein (.1) AT5G39130 179 / 1e-56 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038457 [exp] 342 / 6e-121 AT5G38960 192 / 8e-62 RmlC-like cupins superfamily protein (.1) Lus10023349 [exp] 320 / 2e-112 AT3G05950 206 / 3e-67 RmlC-like cupins superfamily protein (.1) Lus10035278 [exp] 219 / 4e-72 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10030048 [exp] 218 / 1e-71 AT3G05950 249 / 3e-84 RmlC-like cupins superfamily protein (.1) Lus10030047 [exp] 216 / 5e-71 AT3G05950 256 / 7e-87 RmlC-like cupins superfamily protein (.1) Lus10035280 [exp] 214 / 2e-70 AT3G05950 252 / 2e-85 RmlC-like cupins superfamily protein (.1) Lus10035186 [exp] 214 / 3e-70 AT5G39190 265 / 2e-90 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Lus10034254 [exp] 213 / 5e-70 AT5G39160 251 / 6e-85 RmlC-like cupins superfamily protein (.1.2.3) Lus10035185 [exp] 211 / 5e-69 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G163800 [exp] 219 / 1e-72 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.011G163200 [exp] 216 / 4e-71 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G162932 [exp] 216 / 4e-71 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163300 [exp] 210 / 4e-69 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163216 [exp] 210 / 4e-69 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.001G465100 [exp] 199 / 2e-64 AT5G39160 253 / 8e-86 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G162200 [exp] 190 / 4e-61 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.013G052300 [exp] 189 / 2e-60 AT5G39110 281 / 2e-96 RmlC-like cupins superfamily protein (.1) Potri.013G052000 [exp] 187 / 7e-60 AT5G39110 282 / 5e-97 RmlC-like cupins superfamily protein (.1) Potri.013G052100 [exp] 187 / 9e-60 AT5G39110 285 / 2e-98 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10023350 pacid=23180971 polypeptide=Lus10023350 locus=Lus10023350.g ID=Lus10023350.BGIv1.0 annot-version=v1.0 ATGGATTCCAAGTTTGTTCTGCTCTTTGTACTTCTTGCATTGGCCTCTTCTGTCGCTCTGGCCACCGACGCCGGCCCGCTTCAGGATTTCTGCGTCGCCG ACAAAAATGGACCCCCGACGAACGGGTTCGCGTGCAAGCCACCCGCTTCGGTAACTCCGGATGACTTCAGTGTCGCCGGGATTGACAAACCCGCCACCGT CTCGAATGCACACGGTTGCGTAGCCTCTGCCTTCAATGTCCAACAGATCCCAGGTCTCAACACCCTAGGCCTCTCCATGGTTCGTCTCGACTTTGTCAAA GACGGAGTTAACCCGCCCCACCTACACCCTAGAGCCAGCGAGATCATGGTCGTGATGGAGGGCACCATTGAAGCAGGGTTCATCACCTCATTGCCCGAGA AGCGCGTCATCTCCAAGGTCCTCAAGACCGGGGAGGCGTTCGTGTTCCCCACCGCGCTGATCCATTACCAGAAGAACGTCGGTGAGGGCCCCGCTTACGC TCTCGCAGCTCTCAACAGCCAGAACCCCGGTACCCAGCCGGCCTTAGCCTCCGTGTTTGGGTCCACCCCGAAGCTTCCGGTTGAAGTTCTGACTAAGGCT CTCGACTCTGATGCGGAAATGGTTAATCAGCTCCTGGGCAAATTCAAATGA
AA sequence Show only first row Show all	>Lus10023350 pacid=23180971 polypeptide=Lus10023350 locus=Lus10023350.g ID=Lus10023350.BGIv1.0 annot-version=v1.0 MDSKFVLLFVLLALASSVALATDAGPLQDFCVADKNGPPTNGFACKPPASVTPDDFSVAGIDKPATVSNAHGCVASAFNVQQIPGLNTLGLSMVRLDFVK DGVNPPHLHPRASEIMVVMEGTIEAGFITSLPEKRVISKVLKTGEAFVFPTALIHYQKNVGEGPAYALAALNSQNPGTQPALASVFGSTPKLPVEVLTKA LDSDAEMVNQLLGKFK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02335		GL22	germin-like protein subfamily ...		Lus10023350 [exp]	0	1
AT5G44940			F-box/RNI-like superfamily pro...		Lus10000726 [exp]	1.0	1.0000
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036927 [exp]	1.4	0.9999
AT5G36000			unknown protein		Lus10004013 [exp]	2.4	0.9958
AT4G28365		AtENODL3	early nodulin-like protein 3 (...		Lus10039852 [exp]	2.8	0.9930
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Lus10000747 [exp]	3.9	0.9911
AT3G54200			Late embryogenesis abundant (L...		Lus10007649 [exp]	4.9	0.9830
					Lus10000586 [exp]	5.2	0.9825
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007352 [exp]	5.5	0.9817
AT5G61850	LFY	LFY3, LFY	LEAFY 3, floral meristem ident...		Lus10016732 [exp]	6.0	0.9878
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10042576 [exp]	6.2	0.9742

Compare expression of checked genes

Lus10023350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.