Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05950 236 / 4e-79 RmlC-like cupins superfamily protein (.1) AT5G39120 235 / 1e-78 RmlC-like cupins superfamily protein (.1) AT5G39110 234 / 2e-78 RmlC-like cupins superfamily protein (.1) AT5G39150 234 / 2e-78 RmlC-like cupins superfamily protein (.1) AT5G39180 233 / 8e-78 RmlC-like cupins superfamily protein (.1) AT5G39160 232 / 1e-77 RmlC-like cupins superfamily protein (.1.2.3) AT5G38940 232 / 2e-77 RmlC-like cupins superfamily protein (.1) AT5G39130 230 / 8e-77 RmlC-like cupins superfamily protein (.1) AT5G39190 230 / 9e-77 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT3G04200 230 / 1e-76 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038456 [exp] 333 / 1e-117 AT3G05950 204 / 9e-67 RmlC-like cupins superfamily protein (.1) Lus10038441 [exp] 329 / 5e-116 AT5G38940 223 / 5e-74 RmlC-like cupins superfamily protein (.1) Lus10035185 [exp] 276 / 5e-95 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10035186 [exp] 275 / 2e-94 AT5G39190 265 / 2e-90 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Lus10032016 [exp] 272 / 3e-93 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10032015 [exp] 271 / 4e-93 AT5G39160 262 / 3e-89 RmlC-like cupins superfamily protein (.1.2.3) Lus10015129 [exp] 264 / 3e-90 AT5G39130 242 / 2e-81 RmlC-like cupins superfamily protein (.1) Lus10032017 [exp] 265 / 2e-89 AT3G05950 252 / 5e-84 RmlC-like cupins superfamily protein (.1) Lus10026962 [exp] 260 / 1e-88 AT3G05950 251 / 6e-85 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G163200 [exp] 295 / 3e-102 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G162932 [exp] 294 / 4e-102 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163800 [exp] 286 / 3e-99 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.001G465100 [exp] 282 / 2e-97 AT5G39160 253 / 8e-86 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163300 [exp] 282 / 3e-97 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163216 [exp] 281 / 7e-97 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G162200 [exp] 259 / 4e-88 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.013G052000 [exp] 247 / 2e-83 AT5G39110 282 / 5e-97 RmlC-like cupins superfamily protein (.1) Potri.001G464000 [exp] 245 / 8e-83 AT5G39190 231 / 4e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.019G026400 [exp] 245 / 1e-82 AT3G05950 288 / 2e-99 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10023351 pacid=23181103 polypeptide=Lus10023351 locus=Lus10023351.g ID=Lus10023351.BGIv1.0 annot-version=v1.0 ATGGCATCATCATCAACACTAGTAGCTAGCATCCTCATCTTTGCTCTAATGTCACTTTCCACAGCCGACCCAGCCAACCTCCAAGATTTCTGCGTCGCCG ACCCCAAATCTCCGGTCCTCGTCAACGGCGTCGCATGCAAAAAACCCCAAATGGTCACATCCCAAGACTTCTACTTCTCCGGACTTCACATGGCCGGCAA CACAACCAACCCACAGGGCTCGAGAGTCACTCCGGTATCCGTCGCCCAACTCCCCGGCCTCAACACGTTGGGCGTATCCATGGCCCGAGTCGACTACGCG CCCTTCGGACAGAACCCCCCCCACACGCACCCACGCGCCACCGAGATCCTGACAGTAATCGAAGGGAGCCTCGAGGTCGGATTGGTCACTTCCAACCCGG GCAACGCTCACTACCGCAAGACGTTGGTCAAAGGTGACGTGTTCGTGTTCCCTGCGAATTTGGTGCATTACCAACGTAACCCGTGGGACGTGCCCGCTGT TGCCATTGCGGCGTTCTCGAGCCAGAACCCTGGAGTCATCTCCGTTGCGAATTCGGTGTTTGGTTCGACTCCGGCCATTCCTGCTGATATTCTTGCAAAG GCCTTCTCGCTTGATGTTAAGGTTGTCAACTTTCTGCAGACCAAGTTCTGA
AA sequence Show only first row Show all	>Lus10023351 pacid=23181103 polypeptide=Lus10023351 locus=Lus10023351.g ID=Lus10023351.BGIv1.0 annot-version=v1.0 MASSSTLVASILIFALMSLSTADPANLQDFCVADPKSPVLVNGVACKKPQMVTSQDFYFSGLHMAGNTTNPQGSRVTPVSVAQLPGLNTLGVSMARVDYA PFGQNPPHTHPRATEILTVIEGSLEVGLVTSNPGNAHYRKTLVKGDVFVFPANLVHYQRNPWDVPAVAIAAFSSQNPGVISVANSVFGSTPAIPADILAK AFSLDVKVVNFLQTKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05950			RmlC-like cupins superfamily p...		Lus10023351 [exp]	0	1
					Lus10002332 [exp]	1.7	1.0000
AT2G43870			Pectin lyase-like superfamily ...		Lus10011417 [exp]	3.0	1.0000
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004856 [exp]	3.2	1.0000
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Lus10012991 [exp]	4.0	1.0000
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10014056 [exp]	4.5	1.0000
AT1G17930			Aminotransferase-like, plant m...		Lus10031075 [exp]	4.9	1.0000
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10033189 [exp]	5.3	1.0000
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10033628 [exp]	5.7	1.0000
AT2G31750		UGT74D1	UDP-glucosyl transferase 74D1 ...		Lus10009409 [exp]	6.0	1.0000
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10029847 [exp]	6.0	0.8786

Compare expression of checked genes

Lus10023351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.