Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55390 856 / 0 EDM2 ENHANCED DOWNY MILDEW 2 (.1.2) AT5G48090 331 / 5e-99 ELP1 EDM2-like protein1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038453 [exp] 922 / 0 AT5G55390 444 / 4e-143 ENHANCED DOWNY MILDEW 2 (.1.2) Lus10038454 [exp] 451 / 5e-145 AT5G55390 184 / 7e-50 ENHANCED DOWNY MILDEW 2 (.1.2) Lus10001729 [exp] 333 / 1e-95 AT5G55390 622 / 0.0 ENHANCED DOWNY MILDEW 2 (.1.2) Lus10002269 [exp] 184 / 2e-52 AT5G55390 174 / 8e-50 ENHANCED DOWNY MILDEW 2 (.1.2) Lus10002268 [exp] 134 / 6e-35 AT5G48090 148 / 7e-41 EDM2-like protein1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G359900 [exp] 1057 / 0 AT5G55390 915 / 0.0 ENHANCED DOWNY MILDEW 2 (.1.2) Potri.014G163301 [exp] 47 / 2e-06 AT5G55390 56 / 2e-10 ENHANCED DOWNY MILDEW 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12047 [flax] [poplar] DNMT1-RFD Cytosine specific DNA methyltransferase replication foci domain
Representative CDS sequence Show only first row Show all	>Lus10023353 pacid=23180957 polypeptide=Lus10023353 locus=Lus10023353.g ID=Lus10023353.BGIv1.0 annot-version=v1.0 ATGTTATCGTCGGACGATGAGGCCGATGCTGGCCCGACGTCTGTTTCGGAATACCATTTTGAGGACGATGAGCAGGATCCAATTTCGTTCTCTGTACTTC CCGTCAAATGGAGCGACGACGAGGATGCTCCCGATGGTGTTCAGCAGATCTTCTTGCGTGGAGCTGCCGACCGTGGCCTCCAGACGGTATTTAAGCCCGT CAAGGCGTGGAAGTTTGATCTGACAAATGCTTTTTCTGAGATATCTGTCCTAACCAAGGACGATTCATGGATTAAATTGCTGAAGCCAAGGAAGAGCTTT GAGGCGATTGTTAGGACTACCTTGGTAACCGTACAATTCCTCCATTTGGTGAAGAGGAATCCAGACTCGTCAGGAAAACCCATATGGGAAAATTTGTCGA AGACATTCAGTGCATACGAAGTTAAACCTTCTCAGGATGATTTGATAGACCACATGGATTTAATTAGTGAAGCTGTTAGTAGGGATGATTCGTTGAAGAG GTGCAAGTTCTTGCTCTCATTTATGGAGGGGAAGCCGAGAAAGAAGACAATGGCTGATAAGGATAAGCAAACTGTGAAGATGTCTGGATTTTTGGTTGAT GACATCGATGAAGGTATCTTTGAAGCTGCTGAGGAAGAAGATGATCCAAATGATGATTTGTTTGATTCAGTTTGTGCATTTTGTGACAATGGTGGGGAGA TCTTATGCTGTGAAGGCAAGTGCATGAGAGCATTTCATGCTAGTAAGGAGGCCGGTGAAGAATCTTTTTGCGAGTCGTTGGGGCTATCTAAGAAAGAAGT TAATGAAATGCAGAACTTTGTCTGTAAGAATTGTGAGTCTGAGCAGCATCAGTGTTTTGCTTGTGGAAACTTGGGTTGCTCAAAGAAATCTTCTGATGCT GAGGTTTTCCGTTGTGCCAATGCCACATGTGGCTATTTTTATCACCCACATTGTGTTGCAAAATTGCTTCACCCTGGGGATCAGGTTGCTGCAGAGGAGC TTGAGAAAAAGATAGCTACCCGAGAAAGTTTCTTGTGTCCCATCCACAAGTGCTGCCATTGTAACCAAGGAGAGAACAAGGAGATTCCGGACTTGCAATT TGCTGTCTGCAGGCGGTGTCCAACAGCATACCATTCAAAATGCCTGCCAAAGTCGGAGATTCATATTGCAAAAGATGACGATGACGAAGATGATGGTGAA GAAGGAGAGGATATAGTAGATAGAGGATGGAAGAATCTGTTACCAAACCGAATATTGCTATATTGCTTGAAGCACACGATTGAGGAGGACCTAGGAACTC CAGCCAGAGATCATATAAAATTCCCTGGTTCGGAAGTCAAAAGAAGTACTGTTGAAGAAAAGATGAGCAAAAGTAAAACGCTTCTGGAGAAATACACGAC TATAGCTGACTCTTCATCTGGGAAGATCGCTTCTAAAGGTCGGGCGCTTAATTCTTTATCTTCAAGGCAACATGAAAGCATTGACAAAGGCAAGAAGAAG TTGTCTTCCACATATTCTTTTAAGAGTGCTGGAACGGGCGACCCTTCCATGAGTTTTCCGAGAGAAAGAAAAAAGGTTGTGCCACCAAAGATTGACGGAT CTGCTCCATCTGGTGCAAACAAATCCTCTATAGGTGACAAGTTGTTTGACTTAATGAACACGAGTTCTGGTGAAAATCCTGCAAAGCAAAAAAGAAATGA TAGTAGGGTAAATAGAGCATCTACCAACACAAATGCTCAAAAGAAGCCGGGTATAGATCTGCCAGAATTAGATGCTGACTCAGAGAGGAGACTTTTAGCC TTGATGAAAAGTGCCTCTTCTTCAGTATCAATGGCAGATATGGTGAAAAAGTACAAAGCACCTTCTACACATATATATTCGTCTAGGACTGCTGTGGACA AGACCATTACTTTGGGAAAGGTGGAAGGTGCTGTTGAGGCTGTGAGGACAGCTGCAAAGAAACTGGAGAACAAATGTAGTGTTGAGGATGCAAAAGCTGT ATGTGAACCAGGAGTTCTGGGCCAGGTTTTCAAGTGGAAGAATAATCTGAGGGTATATCTTGCTCCATTCCTGCATGGCATGCGGTATACTTCTTTTGGA CGGCATTTTACTAAACCAGAAAAACTTGCGGAGATTGTCAATAAGCTTCATTGGTATGTGGAAAGCGGTGATATGATTGTGGACTTCTGTTGTGGTGCTA ATGATTTTAGTTGCCTAATGAAGAACAAGCTTGATGAGATGGGGAAAAAGTGTTCATACAAAAATTATGACTTGTTTCGGCCGAAGAATGCCTTCAACTT TGAGAAGAGAGATTGGATGACTGTAAAGCCTCATGAGCTGCGGAAACAAGGTTCAAATTTGATTATGGGGTTAAATCCTCCCTTTGGGGTGAAAGCGGCT TTGGCTAACAAGTTCATTGATAAAGCCCTCGAGTTTAAACCAAAGCTTATCATTCTTGTTGTGCCACCTGAGACTCAAAGGTTAGACAATAAGAATCCTC CTTATGATCTCGTCTGGGAAGATTATGAATCTTTGGGAGGAAAGTCGTTCTATCTGCCTGGATCAGTTGATGATGATGATAAAATGTTGGATCAATGGAA TGCTACTGCACCAGTCCTTTATCTCTGGAGTAGGCATGATTTTACTAAAACACACAAGGTTATAGCTGAAAAACAAGGTCATGTGTTGGGACAGGGAAGA ATAGACAATACAGTCAATACTATGCGGCAAGAAGTTGTAACTGAAGTGCAAGATCTCTATAATGAAGGTTCAGTACTGATTGGGAATCCTGGCACGAATA TTAAGCAATCAGAAGGATCAGCTGATAGGGCAGCTGGAGGCGAAGATCGTACGGAGAGCTTCCCTAGTGAATGCAGTGAGACAAAAGCCCCAGCTGCCTT TGGCTTCATGAAAAAACTGTCGGAAACAACTTCGAATAAAGGAACTTATGACGAACAAAAGAGTGAAAGAGGAGCATCTGAGAAATGTACTGTGGAAACT CAAGATTCCCGGGGCTTGGTGAAAGAGTCAAATAAAACGCAGCACTTAGAACAAAAGCTTGAAAGACGAGCATCTGAGAGTTCCAGAGGGGAAGTTCAAG GCGCCACTGGCTTGGAGAAGAAAGAGTCTTCAAATAATTCAAATAAAAGGAAGTATGATGCACAAAAGCTTGAAAGAGGAGCATCAGAGAAATCTTCTGG GGATAGCCAAAAAGGAAAAAAGCTTCCTAGAAGATCTACTCCAATTCCATCGCCTTCGGAGACTAGAGAATCAGGTGGCCTTTCAGAGACACGCGAAATT AACAGAAGACATCCTGACATTGGGTATCCCCCCAGTGGAAGTTACGCTGAGCTGTCAGCACGGGTGGCACATGATGCAAAATTGCTCGAAAGAAGAGCAC CTGAGATTCCTACGGTGGAGGGCCAGGTAGGAGGAAACTTCCATAGAAAGGTGCCTGAAATTCCACCCCTTCAGGAAATGGGTGGAACCGCTTATCAACA CTGTGGACGTGATGCAGCTACGGCGTATGGACATCACACACAGGCCTATGGCGGAAATCGAGACACTATTCTTGATGACATAAGCAGGAGGCACGGCTTT GACGCTGGGTATCAACAGACCGGAGCTTATTTCGAGTCATCGGCGGCACAATCAAATTTTGGAACAAACAGTTCCGTGTCAGATAAGTATATGCAGCAAT CATCTTACGGAACGTCCGGGTCTGTGATGGATAGGTATGCTCCGCTGTTGCACGAATTAAATCAGCAACCAATCCATCCATTAAATCAGCAACCAATGCA TGCATTAAATCAACAACCAATGCTTGGATGTTTTGATTATGGAGGTGGTGGGGGTTATGAAAACCGACAGCATCCTGGATCTGCAGGGTTCCCGGTTGAT TCGGCGAATCTCCCCCCTCATGGTCCTCCTATGCATCCAGGATCTGGGTTTGGAGGTGGACACATGGCACAACAGCAGCCTCCACCCGGGTTTCCGATGG GATTTGCTCCTGGTCCTCAGCAACACCCATATGGACACCATTACGGCTCGGCAGGTTGGATGAATGACGAGTAG
AA sequence Show only first row Show all	>Lus10023353 pacid=23180957 polypeptide=Lus10023353 locus=Lus10023353.g ID=Lus10023353.BGIv1.0 annot-version=v1.0 MLSSDDEADAGPTSVSEYHFEDDEQDPISFSVLPVKWSDDEDAPDGVQQIFLRGAADRGLQTVFKPVKAWKFDLTNAFSEISVLTKDDSWIKLLKPRKSF EAIVRTTLVTVQFLHLVKRNPDSSGKPIWENLSKTFSAYEVKPSQDDLIDHMDLISEAVSRDDSLKRCKFLLSFMEGKPRKKTMADKDKQTVKMSGFLVD DIDEGIFEAAEEEDDPNDDLFDSVCAFCDNGGEILCCEGKCMRAFHASKEAGEESFCESLGLSKKEVNEMQNFVCKNCESEQHQCFACGNLGCSKKSSDA EVFRCANATCGYFYHPHCVAKLLHPGDQVAAEELEKKIATRESFLCPIHKCCHCNQGENKEIPDLQFAVCRRCPTAYHSKCLPKSEIHIAKDDDDEDDGE EGEDIVDRGWKNLLPNRILLYCLKHTIEEDLGTPARDHIKFPGSEVKRSTVEEKMSKSKTLLEKYTTIADSSSGKIASKGRALNSLSSRQHESIDKGKKK LSSTYSFKSAGTGDPSMSFPRERKKVVPPKIDGSAPSGANKSSIGDKLFDLMNTSSGENPAKQKRNDSRVNRASTNTNAQKKPGIDLPELDADSERRLLA LMKSASSSVSMADMVKKYKAPSTHIYSSRTAVDKTITLGKVEGAVEAVRTAAKKLENKCSVEDAKAVCEPGVLGQVFKWKNNLRVYLAPFLHGMRYTSFG RHFTKPEKLAEIVNKLHWYVESGDMIVDFCCGANDFSCLMKNKLDEMGKKCSYKNYDLFRPKNAFNFEKRDWMTVKPHELRKQGSNLIMGLNPPFGVKAA LANKFIDKALEFKPKLIILVVPPETQRLDNKNPPYDLVWEDYESLGGKSFYLPGSVDDDDKMLDQWNATAPVLYLWSRHDFTKTHKVIAEKQGHVLGQGR IDNTVNTMRQEVVTEVQDLYNEGSVLIGNPGTNIKQSEGSADRAAGGEDRTESFPSECSETKAPAAFGFMKKLSETTSNKGTYDEQKSERGASEKCTVET QDSRGLVKESNKTQHLEQKLERRASESSRGEVQGATGLEKKESSNNSNKRKYDAQKLERGASEKSSGDSQKGKKLPRRSTPIPSPSETRESGGLSETREI NRRHPDIGYPPSGSYAELSARVAHDAKLLERRAPEIPTVEGQVGGNFHRKVPEIPPLQEMGGTAYQHCGRDAATAYGHHTQAYGGNRDTILDDISRRHGF DAGYQQTGAYFESSAAQSNFGTNSSVSDKYMQQSSYGTSGSVMDRYAPLLHELNQQPIHPLNQQPMHALNQQPMLGCFDYGGGGGYENRQHPGSAGFPVD SANLPPHGPPMHPGSGFGGGHMAQQQPPPGFPMGFAPGPQQHPYGHHYGSAGWMNDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10023353 [exp]	0	1
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Lus10031369 [exp]	1.0	0.9163
AT5G23490			unknown protein		Lus10019229 [exp]	1.4	0.8996
AT4G12750			Homeodomain-like transcription...		Lus10016078 [exp]	3.5	0.8931
AT1G10390			Nucleoporin autopeptidase (.1....		Lus10008288 [exp]	3.7	0.8688
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10006095 [exp]	4.9	0.8959
AT5G04895			DEA(D/H)-box RNA helicase fami...		Lus10043459 [exp]	5.0	0.8887
AT3G02065			P-loop containing nucleoside t...		Lus10020088 [exp]	5.2	0.8773
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10027496 [exp]	7.0	0.8833
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10009711 [exp]	7.7	0.8874
AT5G42940			RING/U-box superfamily protein...		Lus10010036 [exp]	8.0	0.8810

Compare expression of checked genes

Lus10023353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.