Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30470 871 / 0 SIT4 phosphatase-associated family protein (.1.2.3) AT1G07990 683 / 0 SIT4 phosphatase-associated family protein (.1) AT2G28360 676 / 0 SIT4 phosphatase-associated family protein (.1) AT3G45190 675 / 0 SIT4 phosphatase-associated family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038452 [exp] 1232 / 0 AT1G30470 842 / 0.0 SIT4 phosphatase-associated family protein (.1.2.3) Lus10037400 [exp] 664 / 0 AT1G07990 976 / 0.0 SIT4 phosphatase-associated family protein (.1) Lus10016088 [exp] 633 / 0 AT3G45190 840 / 0.0 SIT4 phosphatase-associated family protein (.1) Lus10021468 [exp] 591 / 0 AT3G45190 851 / 0.0 SIT4 phosphatase-associated family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G014700 [exp] 751 / 0 AT1G07990 1019 / 0.0 SIT4 phosphatase-associated family protein (.1) Potri.004G211500 [exp] 743 / 0 AT1G07990 991 / 0.0 SIT4 phosphatase-associated family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04499 [flax] [poplar] SAPS SIT4 phosphatase-associated protein
Representative CDS sequence Show only first row Show all	>Lus10023354 pacid=23180953 polypeptide=Lus10023354 locus=Lus10023354.g ID=Lus10023354.BGIv1.0 annot-version=v1.0 ATGTTTTGGCGTATGGCTGGCCTCTCCACTGCTTCGCCGGTGGAGACAATATTGGATAAAGATAATTTTACTCTCGAGGAGCTGCTGGATGAGGATGAAA TAATTCAAGAATGCAAGGCTCTCAATGGACGCCTTATCAACTTGTATTGCTCTCTTCACCATGCACTTGTCCGTATCCAGATTAGACATCGTTATAACGT TTTACCTTGTATTTTACGAGAGAAGGCTCAGGTGGAGAAGTTGATACAATATATTGTAGAAGAGCCTACAGAGGATGCTGAGAAACAGCGAACTTTCAAG CTCCCCTTTATTGCTTGTGAGATTTTTACTTGTGAGGTTGATATCATTCTTAAAACGTTGGTAGAGGATGAGGAGTTGATGAACTTGTTGTTTTCGTTCT TGGAACCAACCCATTCCCATGGGACTCTCTTAGCAGGTTACTTCAGCAAGGTTTGCATATGCCTCTTGCTTCGGAAGACCGTTCCTTTCTTAAATTATGT CAAGGCTCATCAGGAAATATTTGGAAAACTGGTTGACCTTATTGGGATTACCTCTATCATGGAGGTGTTAATTCGGTTAATTGGTGCTGATGAACATTTG TACTCGAGTTACACAGATGCCATGCAGTGGATACATGATACAAATGTGTTAGAGTTGATTGTAGACAAGTTCAGCTCATCTGATTTTCCTGAGGTGCATG CTAATACAGCTGAGACCCTTTGTGCAATAACTCGATTTGCACCCCCTGGTCTAGCTGCCAAAATATCAAGCCCGAATTTCATTGGAAGATTGTTTCGACA TGCTTTAGAGGAATCAAGGCCGAAATCTGTACTAGTTAACTCGCTATCTATCTGTATATGTCTGTTAGACCCTAGGAGGCTAAATTTGGGTACATATCAT ACTTATAATCGCCAGCTGAATCAAGGAACTGCTGTCAGTGCTAGTCCAACCATAGTTGAAGGGATGCTGGAAAGCTTAGGTGACCTTTTGAAGCTCTTAG ATGTTTCCTCGACAGACAATGTGTTGTTAACTACATATGGAAAGCTGCAGCCACCTCTTGGCAAACACCGCTTAAAGATTGTGGAGTTCATTTCAGTCAT CCTGACCATTGGCAGTGAAGCTGCTGAGAAGGAACTAATCCGACTTGGAGCCATCCAACGTATATTAGACTTATTTTTTGATTATCCCTACAATAATTTC TTGCACCACCACGTAGAGAGCATAATATTTTCTTGTTTGGAGAGCAAGAATGGCTGTCTTTGCGAACATCTTCTTCGTGATTGTAGTCTTTTGACGAAAA TACTTGAAGCAGAAACGAAAATCACATTGACAACTGACTCAAGCAAGCCTACTGTTCCTGCTGAGGGTCGATCGCCTCCTAGGATAGGGAATATTGGACA CTTGACACGCATATCTAACAAGCTGGTTCAATTGGCCAATAATAGCTCTGCTATTCAAGCGCTGTTGCAGGAAAACAATCAATGGGTTGAGTGGCAGAGT GTCCTGACAAAGCGTAATGTGGTCGAAAATGTCCATCAGTGGGGCTGTGGGAGGCCAACTGCTCTGCAAGACCGTAGAGATAGTGATGACGACGATTATC AAGATAGAGACTATGACGTTGCAGCTCTAGCAAACAATTTAAGTCAAGCATTCCAATATGGTATTTACAACAACGATGACATGGATGAGGTGCGTGGTTC ACTTGAAAGAGATGATGAGGATGTCTACTTCGATGATGAATCTGCTGAAGTAGTCATATCTTCTTTACGTTTGGGTGATGACCAGGACAGCAGTTCGCTA TTTACAAACTCGAATTGGTTTGCTTTCGAGGATGACAGAGCTGCCGCCAACGAGCGGTCCGATGGAAACCTCGCTTCCTTGCTGAACAACGAGGACGGGA CGGGTGCTGCTGCCGGTGATGCCGGCAACAAAGATGACGACTTGGGCGACACAGCCACGTCTTCAACATCTGTCGAGCCCAACCCGGACGAGAAGATTCT TCCCAAAGATTCAAATGAAGCTGGAACCGTGACGGATGACGCACCATCATCTGCTTGGGTGGAGTGGAGGGAAACACCAGATGTCAACGATTCGCCTGGC TCGAAGCAACCTCCAGCACCAAGCAGTGAGCATCAAGTCGACGAAGGAAATTCGGAGCCTAGTGAGCAGCCAACTAGTGATGTTGCTTTAATAGAAAGTG AGAATGCTTCTGCTTCTGCTTCTGCTTCTGCTGAAGGGCCGACATCAGACTCGGCCAACGAGAACCCGACTTCTAGCTCTTCGGCATCACCTGTTGAATC AGACCCCAGTAGTCATGTTGATGCGCAGTCTCCGGTAGTAACCACTGAAGATAAAGCTGGAGAAGTGGTTAAAGATGATGGCGTTGATGATGAGAAGGAG GATGTGGAGAAGGAGAAGAGCAAGTAA
AA sequence Show only first row Show all	>Lus10023354 pacid=23180953 polypeptide=Lus10023354 locus=Lus10023354.g ID=Lus10023354.BGIv1.0 annot-version=v1.0 MFWRMAGLSTASPVETILDKDNFTLEELLDEDEIIQECKALNGRLINLYCSLHHALVRIQIRHRYNVLPCILREKAQVEKLIQYIVEEPTEDAEKQRTFK LPFIACEIFTCEVDIILKTLVEDEELMNLLFSFLEPTHSHGTLLAGYFSKVCICLLLRKTVPFLNYVKAHQEIFGKLVDLIGITSIMEVLIRLIGADEHL YSSYTDAMQWIHDTNVLELIVDKFSSSDFPEVHANTAETLCAITRFAPPGLAAKISSPNFIGRLFRHALEESRPKSVLVNSLSICICLLDPRRLNLGTYH TYNRQLNQGTAVSASPTIVEGMLESLGDLLKLLDVSSTDNVLLTTYGKLQPPLGKHRLKIVEFISVILTIGSEAAEKELIRLGAIQRILDLFFDYPYNNF LHHHVESIIFSCLESKNGCLCEHLLRDCSLLTKILEAETKITLTTDSSKPTVPAEGRSPPRIGNIGHLTRISNKLVQLANNSSAIQALLQENNQWVEWQS VLTKRNVVENVHQWGCGRPTALQDRRDSDDDDYQDRDYDVAALANNLSQAFQYGIYNNDDMDEVRGSLERDDEDVYFDDESAEVVISSLRLGDDQDSSSL FTNSNWFAFEDDRAAANERSDGNLASLLNNEDGTGAAAGDAGNKDDDLGDTATSSTSVEPNPDEKILPKDSNEAGTVTDDAPSSAWVEWRETPDVNDSPG SKQPPAPSSEHQVDEGNSEPSEQPTSDVALIESENASASASASAEGPTSDSANENPTSSSSASPVESDPSSHVDAQSPVVTTEDKAGEVVKDDGVDDEKE DVEKEKSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30470			SIT4 phosphatase-associated fa...		Lus10023354 [exp]	0	1
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10015341 [exp]	2.0	0.9119
AT4G11110		SPA2	SPA1-related 2 (.1)		Lus10032358 [exp]	2.4	0.9066
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Lus10000135 [exp]	3.5	0.8658
AT5G59710		ATVIP2, VIP2	VIRE2 interacting protein 2 (....		Lus10004921 [exp]	4.0	0.8986
AT3G11960			Cleavage and polyadenylation s...		Lus10013542 [exp]	4.8	0.9141
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Lus10026018 [exp]	6.0	0.8818
AT4G21100		DDB1B	damaged DNA binding protein 1B...		Lus10020922 [exp]	9.5	0.8649
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10019875 [exp]	10.0	0.8715
AT5G10200			ARM-repeat/Tetratricopeptide r...		Lus10029573 [exp]	10.5	0.8429
AT3G14750			unknown protein		Lus10038143 [exp]	11.2	0.8644

Compare expression of checked genes

Lus10023354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.