Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30480 381 / 3e-131 DRT111 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1) AT2G16940 54 / 1e-07 Splicing factor, CC1-like (.1.2.3) AT5G09880 50 / 1e-06 Splicing factor, CC1-like (.1) AT4G36690 49 / 4e-06 ATU2AF65A U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038451 [exp] 525 / 0 AT1G30480 455 / 6e-160 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1) Lus10005059 [exp] 56 / 3e-08 AT2G16940 534 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10025075 [exp] 56 / 4e-08 AT2G16940 565 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10027830 [exp] 55 / 5e-08 AT2G16940 553 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10034466 [exp] 55 / 7e-08 AT2G16940 569 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10037299 [exp] 53 / 2e-07 AT1G60900 629 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Lus10024026 [exp] 51 / 1e-06 AT4G36690 678 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4) Lus10035713 [exp] 50 / 2e-06 AT1G60900 640 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Lus10000826 [exp] 49 / 3e-06 AT5G09880 589 / 0.0 Splicing factor, CC1-like (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G098100 [exp] 419 / 1e-146 AT1G30480 348 / 1e-118 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1) Potri.001G372600 [exp] 404 / 2e-140 AT1G30480 327 / 5e-110 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1) Potri.011G050400 [exp] 55 / 4e-08 AT1G60900 532 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Potri.004G040900 [exp] 53 / 2e-07 AT1G60900 541 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Potri.007G009800 [exp] 50 / 2e-06 AT5G09880 519 / 9e-180 Splicing factor, CC1-like (.1) Potri.004G177000 [exp] 50 / 3e-06 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.009G137200 [exp] 50 / 3e-06 AT2G16940 535 / 0.0 Splicing factor, CC1-like (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [flax] [poplar] G-PATCH PF01585 [flax] [poplar] G-patch G-patch domain
Representative CDS sequence Show only first row Show all	>Lus10023355 pacid=23180941 polypeptide=Lus10023355 locus=Lus10023355.g ID=Lus10023355.BGIv1.0 annot-version=v1.0 ATGTTCGGCGGATTGTATGGAGACCTCCCACCGCCGTCCAAGGCAGCGGAAGAGGAGAAATCCAGCGCAAATGCTTCCGCCGCGTGGTCAACCTCCACCC TAATGGCGCCACCGACGCTCCGAAAATCGTCCACAGCCTTTGCACCTCAGACAATTCTTAAATCCGCAAGCAAAGCGAAGCCAAACTCTGCTACCAAGGT CACTTTGGTGACGTCGTCACCGTCGATCCCGGCGCCGAAGCGAGAGGAGGTGGCTCAACAACCGGCACTAGTGGGAGTTCAGTCGCTGGTGATCGAGGAG TACGATCCTGCAAGGCCGAATGACTACGAAGATTACAGGCGGGAGAAGAAGCGGAAGGCTTTGGAGGCGGAGAGGTTGAGGGAGCTGGAGAGGAGGAGGC AAGAAGAGGAGGAGAGGGAGAGGGTGGAGAAGGAAGAGAGGGAGAGGGATAGAGAAAGGGACAAGAATATCTCCGGCGAGGAAGCATGGAGGAGACGAGC GGCGATGAGCGGAGGAGCTGTGCCGAGGACGCCGTCGCCGCCTAGCAGCGGGGATGGAGGATTTAGTATTGAGAAATCGGAGACGGTTGGGTTGGGAGTT GGAGCAGGTGGCCAAATGACTGCTGCTCAGAGGATGATGGCTAAGATGGGATGGAAAGAGGGGCAAGGGCTTGGGAAGCAGGAGCAGGGCATTACAACTC CGTTGATGGCGAAGAAGACTGATCGTCGAGCTGGGGTTATTGTGAACGCCAGTGCGAATAAGCAGCAGTCTTTAGAGAAGAAGGTGAAGAGTGTGAATCT TAACGGACCTCCAACTAGGGTTCTACTGCTCCGAAACATGGTTGGTCCTGGTGAAGTGGACGATGAGCTAGAGGATGAAGTTGCTTCAGAGTGTGCCAAG TATGGGACAGTGACACGGGTTCTCATATTCGAGATCACAGAACCAAATTTCCCTCGACACGAAGCTGTGCGGATCTTTATACAGTTTGAGAGGTCGGAAG AAACAACAAAGGCATTAGTAGATCTAGACGGCCGTTACTTTGGGGGTAACACAGTCAGAGCAACGTTCTACGACGAGGAGAAATTCAACAGTAATGAGTT AGCCCCGCTGCCGGGAGAAATTCCAGGTTTTTGA
AA sequence Show only first row Show all	>Lus10023355 pacid=23180941 polypeptide=Lus10023355 locus=Lus10023355.g ID=Lus10023355.BGIv1.0 annot-version=v1.0 MFGGLYGDLPPPSKAAEEEKSSANASAAWSTSTLMAPPTLRKSSTAFAPQTILKSASKAKPNSATKVTLVTSSPSIPAPKREEVAQQPALVGVQSLVIEE YDPARPNDYEDYRREKKRKALEAERLRELERRRQEEEERERVEKEERERDRERDKNISGEEAWRRRAAMSGGAVPRTPSPPSSGDGGFSIEKSETVGLGV GAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASANKQQSLEKKVKSVNLNGPPTRVLLLRNMVGPGEVDDELEDEVASECAK YGTVTRVLIFEITEPNFPRHEAVRIFIQFERSEETTKALVDLDGRYFGGNTVRATFYDEEKFNSNELAPLPGEIPGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30480		DRT111	DNA-DAMAGE-REPAIR/TOLERATION P...		Lus10023355 [exp]	0	1
AT1G61040		VIP5	vernalization independence 5, ...		Lus10011205 [exp]	2.6	0.8777
AT5G58470		TAF15b	TBP-associated factor 15B (.1....		Lus10026388 [exp]	4.0	0.8761
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10016921 [exp]	4.2	0.8756
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10027539 [exp]	5.9	0.8979
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10013376 [exp]	6.0	0.8778
AT3G04090		SIP1A, SIP1;1	small and basic intrinsic prot...		Lus10030046 [exp]	6.2	0.8892
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10039296 [exp]	8.2	0.8866
AT4G25390			Protein kinase superfamily pro...		Lus10027393 [exp]	8.4	0.8754
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10002870 [exp]	8.8	0.8731
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Lus10019765 [exp]	10.2	0.8140

Compare expression of checked genes

Lus10023355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.