Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30500 182 / 4e-59 CCAAT NF-YA7 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) AT2G34720 166 / 1e-52 CCAAT NF-YA4 "nuclear factor Y, subunit A4", nuclear factor Y, subunit A4 (.1) AT1G54160 123 / 1e-34 CCAAT NFYA5, NF-YA5 NUCLEAR FACTOR Y A5, "nuclear factor Y, subunit A5", nuclear factor Y, subunit A5 (.1) AT1G17590 119 / 1e-32 CCAAT NF-YA8 "nuclear factor Y, subunit A8", nuclear factor Y, subunit A8 (.1.2.3.4) AT3G20910 117 / 2e-32 CCAAT NF-YA9 "nuclear factor Y, subunit A9", nuclear factor Y, subunit A9 (.1) AT3G14020 117 / 2e-32 CCAAT NF-YA6 "nuclear factor Y, subunit A6", nuclear factor Y, subunit A6 (.1) AT1G72830 118 / 3e-32 CCAAT NF-YA3, ATHAP2C, HAP2C "nuclear factor Y, subunit A3", nuclear factor Y, subunit A3 (.1.2.3) AT5G12840 110 / 5e-30 CCAAT NF-YA1, ATHAP2A, HAP2A, EMB2220 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) AT5G06510 94 / 2e-23 CCAAT NF-YA10 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) AT3G05690 92 / 1e-22 CCAAT NF-YA2, ATHAP2B, HAP2B, UNE8 UNFERTILIZED EMBRYO SAC 8, "nuclear factor Y, subunit A2", HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 2B, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 2B, nuclear factor Y, subunit A2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038448 [exp] 323 / 2e-113 AT1G30500 205 / 1e-66 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Lus10016411 [exp] 130 / 6e-37 AT5G12840 140 / 1e-39 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Lus10012202 [exp] 118 / 7e-33 AT1G30500 121 / 7e-34 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Lus10011326 [exp] 116 / 4e-32 AT1G30500 118 / 2e-32 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Lus10019708 [exp] 116 / 3e-30 AT5G17680 495 / 1e-150 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10013592 [exp] 102 / 5e-26 AT5G06510 175 / 1e-52 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) Lus10021259 [exp] 101 / 8e-26 AT5G06510 178 / 5e-54 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) Lus10009944 [exp] 98 / 1e-24 AT5G12840 229 / 1e-73 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Lus10030137 [exp] 91 / 4e-22 AT5G12840 170 / 5e-51 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G098400 [exp] 244 / 6e-83 AT1G30500 171 / 4e-54 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Potri.001G372100 [exp] 240 / 3e-81 AT1G30500 170 / 1e-53 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Potri.009G060600 [exp] 141 / 1e-41 AT5G12840 114 / 9e-30 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Potri.001G266000 [exp] 134 / 8e-39 AT5G12840 103 / 1e-25 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Potri.006G053500 [exp] 129 / 5e-37 AT1G30500 123 / 3e-34 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Potri.006G145100 [exp] 128 / 5e-36 AT1G72830 168 / 3e-49 "nuclear factor Y, subunit A3", nuclear factor Y, subunit A3 (.1.2.3) Potri.018G064700 [exp] 120 / 3e-33 AT1G72830 172 / 5e-51 "nuclear factor Y, subunit A3", nuclear factor Y, subunit A3 (.1.2.3) Potri.016G068200 [exp] 110 / 2e-29 AT5G06510 194 / 2e-60 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) Potri.006G201900 [exp] 107 / 4e-28 AT5G06510 166 / 3e-49 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) Potri.009G052900 [exp] 102 / 4e-26 AT5G12840 203 / 1e-63 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02045 [flax] [poplar] CBFB_NFYA CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
Representative CDS sequence Show only first row Show all	>Lus10023358 pacid=23180946 polypeptide=Lus10023358 locus=Lus10023358.g ID=Lus10023358.BGIv1.0 annot-version=v1.0 ATGGCACATTCTGCTGTTGCAACTGGGAATATACCTTTCTCAACAGCTCCCCTGCTTGGGGCAGGACAAGCTATGGTACCCCAAGGTTACCCTTATCCAG ATCCTTACTATAGAAGCATATTTCCTCCCTACGACTCCCAGCAGTATGCACCTCAGCCCTATGGCGGGCAGCCTATGGTCCATGTTCAACTGATGGGGCT ACAGCAGGGTGGCATGCCATTGCCATCAGATGCAGTTGAAGAACCAGTCTTTGTTAATGCAAAGCAATACCATGGCATATTGAGACGTCGACAATCACGT GCAAAAGCCGAATCAGAAAACAAAGCTATCAAGTCCAGGAAGCCATACTTGCACGAGTCTCGGCACATCCATGCACTGAAAAGAGCAAGAGGATGCGGAG GGAGGTTCCTGAACTCGAAGAAGAACGAGGACAAGCAAGTTGCAAAAAGCAACACCGCATCGGGGGACAAATCGGAATCGAATATCAACTTGAACTCCGA TAGAAGTGACACTGCTTCCTCGAAAGGCAAAACTTAA
AA sequence Show only first row Show all	>Lus10023358 pacid=23180946 polypeptide=Lus10023358 locus=Lus10023358.g ID=Lus10023358.BGIv1.0 annot-version=v1.0 MAHSAVATGNIPFSTAPLLGAGQAMVPQGYPYPDPYYRSIFPPYDSQQYAPQPYGGQPMVHVQLMGLQQGGMPLPSDAVEEPVFVNAKQYHGILRRRQSR AKAESENKAIKSRKPYLHESRHIHALKRARGCGGRFLNSKKNEDKQVAKSNTASGDKSESNINLNSDRSDTASSKGKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Lus10023358 [exp]	0	1
AT3G26935			DHHC-type zinc finger family p...		Lus10022451 [exp]	4.2	0.9379
AT3G26100			Regulator of chromosome conden...		Lus10006242 [exp]	5.9	0.9403
AT3G26890			unknown protein		Lus10031999 [exp]	10.8	0.9211
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10014763 [exp]	11.0	0.9265
AT5G66450			Phosphatidic acid phosphatase ...		Lus10028328 [exp]	11.7	0.9013
AT5G38710			Methylenetetrahydrofolate redu...		Lus10034094 [exp]	14.1	0.9210
AT3G07530			unknown protein		Lus10040483 [exp]	14.3	0.8876
AT3G48480			Cysteine proteinases superfami...		Lus10035097 [exp]	15.5	0.8917
AT5G11680			unknown protein		Lus10020200 [exp]	16.1	0.9250
AT1G62040		ATG8C	autophagy 8c, Ubiquitin-like s...		Lus10015563 [exp]	17.5	0.9309

Compare expression of checked genes

Lus10023358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.