Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34770 365 / 1e-129 ATFAH1, FAH1 ARABIDOPSIS FATTY ACID HYDROXYLASE 1, fatty acid hydroxylase 1 (.1) AT4G20870 357 / 3e-126 FAH2, ATFAH2 ARABIDOPSIS FATTY ACID HYDROXYLASE 2, fatty acid hydroxylase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038447 [exp] 427 / 2e-138 AT2G34780 323 / 1e-100 EMBRYO DEFECTIVE 1611, maternal effect embryo arrest 22 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G463800 [exp] 419 / 4e-151 AT2G34770 376 / 9e-134 ARABIDOPSIS FATTY ACID HYDROXYLASE 1, fatty acid hydroxylase 1 (.1) Potri.011G162000 [exp] 419 / 5e-151 AT2G34770 374 / 3e-133 ARABIDOPSIS FATTY ACID HYDROXYLASE 1, fatty acid hydroxylase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [flax] [poplar] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10023359 pacid=23181053 polypeptide=Lus10023359 locus=Lus10023359.g ID=Lus10023359.BGIv1.0 annot-version=v1.0 ATGGTGGCAAAGGGCTTTGTTGTTGATCTCGATAAACCACTTGTTTTCCAGGTTGGTCATCTGGGAGAGGCATATGATGAATGGGTTCACCAGCCTATTG TTAGCAGAGAGGGCCCAAGGTTCTTCGCAAACGATGTTATGGAGGCCTTGACTCGCACAGTTTGGTGGGCGATTCCAGCCATCTGGCTGCCAGTGGTCTG CTGGTTTTCCTTAATGTCTGCACGGATGGGCCTTGCGCTTCCGGAGGTTGCTTCATTGGTGGTTTTTGGCATTTTCGTATGGACATTACTCGAATACACC TTGCATCGCTTCCTGTTCCACATTAAGACAGCCAGTTATTGGGGAAATACGGCTCACTACCTTCTTCATGGCTGCCACCATAAGCATCCAATGGACGGTT TGCGCCTGGTGTTCCCTCCAGCCGCAACAGCTATCCTACTCGTACCTTTCTGGAACCTGCTGAAGCTTATGGCCACGCCCTCGACTACTCCTGCTCTTTT CGCTGGTGGATTACTGGGATACATCATGTACGACTGCACTCATTACTACTTGCACCATGGACAGCCATCGATCGAAGTCCCTAAAAACCTCAAGAAATAT CATATGAACCATCACTTCAGAGTGCAAGACAAGGGGTTTGGGATCACTTCGTCTCTGTGGGACAGGGTGTTTGGAACACTTCCTCCATCGATTAAAAAGA GCAAGTAG
AA sequence Show only first row Show all	>Lus10023359 pacid=23181053 polypeptide=Lus10023359 locus=Lus10023359.g ID=Lus10023359.BGIv1.0 annot-version=v1.0 MVAKGFVVDLDKPLVFQVGHLGEAYDEWVHQPIVSREGPRFFANDVMEALTRTVWWAIPAIWLPVVCWFSLMSARMGLALPEVASLVVFGIFVWTLLEYT LHRFLFHIKTASYWGNTAHYLLHGCHHKHPMDGLRLVFPPAATAILLVPFWNLLKLMATPSTTPALFAGGLLGYIMYDCTHYYLHHGQPSIEVPKNLKKY HMNHHFRVQDKGFGITSSLWDRVFGTLPPSIKKSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Lus10023359 [exp]	0	1
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10009235 [exp]	4.7	0.8900
AT4G02100			Heat shock protein DnaJ with t...		Lus10036335 [exp]	4.7	0.8897
AT2G19880			Nucleotide-diphospho-sugar tra...		Lus10034973 [exp]	4.7	0.8539
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028196 [exp]	4.9	0.8774
AT1G12460			Leucine-rich repeat protein ki...		Lus10006675 [exp]	6.3	0.8684
AT2G42380	bZIP	ATBZIP34	Basic-leucine zipper (bZIP) tr...		Lus10017656 [exp]	7.9	0.8547
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Lus10017412 [exp]	8.3	0.8789
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Lus10026312 [exp]	9.8	0.8348
AT1G10850			Leucine-rich repeat protein ki...		Lus10013073 [exp]	12.3	0.8437
AT4G02100			Heat shock protein DnaJ with t...		Lus10010272 [exp]	13.3	0.8412

Compare expression of checked genes

Lus10023359 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.