Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34780 265 / 3e-72 EMB1611, MEE22 EMBRYO DEFECTIVE 1611, maternal effect embryo arrest 22 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038447 [exp] 2151 / 0 AT2G34780 323 / 1e-100 EMBRYO DEFECTIVE 1611, maternal effect embryo arrest 22 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G161901 [exp] 617 / 0 AT2G34780 252 / 7e-68 EMBRYO DEFECTIVE 1611, maternal effect embryo arrest 22 (.1.2) Potri.001G463700 [exp] 550 / 6e-168 AT2G34780 360 / 4e-103 EMBRYO DEFECTIVE 1611, maternal effect embryo arrest 22 (.1.2) Potri.007G004001 [exp] 71 / 5e-14 AT2G34780 55 / 2e-09 EMBRYO DEFECTIVE 1611, maternal effect embryo arrest 22 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023360 pacid=23181051 polypeptide=Lus10023360 locus=Lus10023360.g ID=Lus10023360.BGIv1.0 annot-version=v1.0 ATGTCTGAGGTTTCTGCTTCGGAGAAGGCGCAGCTAAACCCCTGCTGTGAATCTTGGAGTGGGAAGTGCTCGAAGTTGCTGGAAGGGAGGAAGGCTCTAA GGAAGGCGGTGCAGCTCCTCAAAGAAGAGCTCGACAAGATTCAACAAGACAATGCCAATCTTAAAAAAGGTTCTTGCAGCAACTTTACTTTTCCCGTATC TTACTGTGTAACTGAGTTTTTTCCAGAATGTGAGGAGGCACGGAACATTGCTGCCAAAGAGAGTGAAAGGAAAGAGAATGAGCTGTCAGAAAAAATGTCT CTTGAGAATGAGGTTTCTGCTTTGAAATCTGAGATCTCGTCACTGCAACAGAGAGGAAGTTTAGATGCGAAAGGGAGGGATAGGGAAATAGGGCTACTGC GCGAACAAGTTTCTGAGACCAACAAACTTAAAGAGCTTCTTGAGAAAGAGAAGAGAAGGGCAGATGCTGAGAAGAAGAACGCTGAGACAGAGAAAAGAAG AGCTGCTGAGGCTCAAAAGCGTATGAAAGCAGAGAAGGTTAAGGCTGTTGAAGAAAATAAGCATGCTGATGTTGAAACAAAGAAGGCTGAGGGTTACAGG GTGCAGTTAGAGGTACTGAAAAAAGATGTTGAGGATATGAATTCATTACTGATTTCCGAGAGGGAGGAGAAAGCAAGATACTTGGCTATTAAGACCTCGT TGGAGAATGAGGTATCTGTTCTTCAATCTGAGATATCCTGTTTGAAGAAAGAATGTGCTGCTGGCCAGCAGAAGGAGAAGGAAACTCAGAATGCCTCTGA AATTTTTGAAAATGCTAATGTAGAGAATGCTGGTGCAGATAGGAAGCATGGTGGCTATTGTGAAAATACAGCTGAAACTTGTCTGCTCCAGTTACAGGCA TTGATGAAAGAAGTAGAAGAAACCAAATCAATGTTGGTTTTCGAAAAGGAGGAGCATAGGAAAGAAGTTGCCCGAAGACTCTTGTTGGAAGAAGAAATTG TTGGGTTAAAGTCTCAAATCTGCTGGTTACAACAAAGAGGAGATGAAGATATTCATGGGGAAATAGAGCTTCTCAAAGGTTCCCTGGGCGGGAAAGAAGA GGAAATTCGGAAACTAAAGGAACTTTTTGATAAAGTTATATCGCAGTTGAATTCTGAGAAGAAGAAAGTTGAAGTGCAGAAGAAGATTGCTGATGAAGCA TGTGAACGGGTGAAAGCTGAAAAGTCTAAGCTGGTCACTGAAAGTAAGAATGCTAGTTATGAAGCAAAGAAGGCTGAAAAATTTCAGGTGCAGTTAGATT ATTTGAAGAAAGACTTCCTTAAAGTGCAATCAGAATTGGAGTCTGAGAAAGAGAAGTTCTCAATGATGAAGGAAAAGCGGGAAGTGGAACGACAAAATGT GATAAAGGCGAGACAGTCGGTGGAAGCTGAAATTGCCAAGGCAGACCACCAAAGAAAGCTTGCTCAAGCGAATGGTAAGGTGTCTGCGAAAGAAAGAGCT CGTGCTGACGAACTTTCTGGCCAGCTAGAACTATATAAACATAAGAATGAGGAGCTGCAGAAACAGATACAACAGTTTCTTCACTGCCAAAATAGTGCAG AACTACCTGGCACTTTGCCTGTGGGAAAAGATAAAACCAAACTCACAAAGATGAAGCTTCTCAAGAAGCAATTGAAGCTTGGAAAGATGCAGTTGAAGCA TTCCAAGCAAGTGGCTGAGTTTGAAAAGCACCGCAATGTGATCCTACGGGAAGAGCTAGGCAACCTGAGGCATGATTTTGTTCGGATTTCTGGTCGCTTG GATCTGCTGGCTAAATGTTTCTCTCCAAATGTTGAAGGTATAGCAGACATGAAAAAGCACAGCGTTAAACAGTTTCCTAACCTTAATTGTTACACATTCC AGGATGGAGCTCTTGGAGAGATCCAGTATCTGATGAAGGGAAGAAAGCTCTATGATATAGAACCACATCAAATGTATACTAAAAAAGAAAGCGAAGATTT CAACCCTGACTGCGGAGCTACAGCTACGACTAATCTTATGAAGCATGCTAATATGCTCTCACCTACATGTGACCTCAATTTATCTACCTCAGGTATTGAT TCTCAGTTGGAGTCTTTTCAGGGAGGCTCTAACACAAAGTTGTTACTACATTCTTCAATGCATGCCAGTTCGGCGTCTTTTTCTGATGGTGAGTTGGTCC ACTCACAGGACAGGGGTGAGTTTGTTCCATTATCAGAGAAAATGGTTGAAGATAATTCTGATTCTCAACCAACTTTTCCCTACGTGTCTGCGGAGGTTAA GAGCTTACCAAAAAGAAGAAATCTTAGTATTGATCATTATGATCACAGAGACCAAGTGGTTTTGGATGCTGTTGAGTCTGTAAAGCATTTGTTCATGGAG GATAAAAAGTTGCATCTACAGATGCAAGAGAAATTTCACCTCTTGCATCAAATTTTGAATGGACAACAGGATGTACAGTTGGAAGAACCAACAAATCTAG ATCCCATCATCCAATATGGCTCATGTGATAAACTTGAGAGATTGCACAAGAGGAGAAAGCTATCCCCTGAAGATGAGTCTGTTTTGAAACCTGTTCATGA TACGGTTAAACCTGGCAACAAGAAAATTTTTGAAGGGAAAGTTATCGGTGAGCTAGATGCAACAAGTCCAAATGATGTTTCTATCAGGGCAGAACAGGCT TTTGAAGAGACTGGTAAGAGTTATGTGAAAGCCGTCCTGGATATTTTGCCCAATTTTGAGGATATAGCTGATGTGGATTACATGAAATTGCTGGAGTTGG ATAACAGTGCTGAGGAGGAAATATACAAGCAAGCAATGGAAATGCCGCTGTCCCCAACACTCCCTGAAATCAGTTTTCCGGAGGCTTTAGTATTATCTGA TGTGCCAAGAAATGCAGAGCTTGGAAGCATCCACCATGAGGAGGCTTTAGTACTTGACACCATTGATATGGAACTGCACTGCAATGAATCAAGAGGTCAT GGCTCTAAAATCACTCATGAGGGATCTCGACATGAGAAGGAAGATCTAGCCGGGGATGTCTATTCTCAATCACTGGAAGCAGATAAAGCTTCCAGTAGAT GGTCGGGGAACTGTGGATATGGGCCTAAGACGGCACGTATTCCCACAATTTTTGTAACTACTTATGTTGAAGATTCCAGGTCCATTTACAGGGTCTTTTC TGCCACAAAAGCTTGCATGGATTACTGTGCTGTAAATAGTCATCCTCACTCCATGCTACAGAGAATCCTGCATGCTGTCAGAATACAGGAAAAAATTTCA TCTATGGAGAGAAGCTGTGTACTCTTCACCTTGATGGTTCTTAACTTCTCTGAATGCAAGTTGGTGAAAACACGAAGGATTTTGTATAAGGATCTAATTG CTTATGTAGATTCTCTGGCTAGAGACCTCCAACCAGTGTTATCTACTGCAGGAGGGAGAAGCTCATTCGAAGAAGTGTGTTCTTTATATGAACTGCTTGG CATCATTGACGACTTTCTCATCAATGGGACAATTTTTGAATGTACCAACTTTACTTCGGATTTCCGTAGTGAGGAAGAATTGAAGTTCAGCAGAAAATCT GCTACAGTTGAACAGATGGTGGTTGGGAGTACTTTGCTGTCATCTATTTGCACATCAACTGGATATCTAGGATTCGTTTGTGAGACTTCCTACAATCTTC TACGGAAATCCAGATGTGATACTGCCTTCCTATTGACGATATTTCATGTCTTTGCTCATGTTGTCCGGGAACAGTATTTCTCCTCTAATGACTTCGGCTT GACCATGATTGTGGTGAGATCAATTGTTGGTTGTCTCGAAAGGAAAATGTCACTGGTTGCTTCAAGCCCTACTTCTCGTTCATCTGAAAATACTATTGAG CTTCAGTTTATTTGCTGCCAAACATGCCCATTTGGTGCAGTTTCCATAGATGTAGTTACGTCTGTGCTGTTGGAAAAGCTCTGGGGTTCTGAGGATCCTG GAACTACCCGTAGAACGGAATCAACAAGTTTGGCCAACTCCAATCTATTGTCGTTTGAGCATAATCAAGTTGGGGAAGGTATTCGTGGGTCAAAGTCTAT CATGAATGGGACGATGGGTGATACAAGCAATATTCTTTCGTTATTAGAGCTTGTCTCCTGCAAAATGGGTTGGGAATGGACGCATAGCAAAGTTATACCC GAGTTGCTTCAAATGTTGGAGAGATCTGTGACAACCACCTTTCAGATTGCTGCTGTTCTTTTCCTCGGTGAAGTTGGAAGGTTTGGAGTCGGTGCTTCAG GTTCTGAAGATAAAGGAGTGGAGAGTCTAACATGCAAATTATCTAGCTTCTTTTGCCAGCTAATGGCCGAGGAAGCCATCTTCTCTGTTCAAATCGCCAC AGTGGCCTCTCTTCTTAGGCTTCTGTTTCTGGACTTGCCAAGTATCGTGGACGAGTCCTTCAAATGCTCGACCACTGCGAGTCAGTCTGCTGCGATCGAT CTGGTGAGGGACTGGTTTTCTCGTTTGAGCAAGGATCGGCAGGCAACGTCGTTAAGCTTCCTGCAATCTCAAATGGACACACGTTGA
AA sequence Show only first row Show all	>Lus10023360 pacid=23181051 polypeptide=Lus10023360 locus=Lus10023360.g ID=Lus10023360.BGIv1.0 annot-version=v1.0 MSEVSASEKAQLNPCCESWSGKCSKLLEGRKALRKAVQLLKEELDKIQQDNANLKKGSCSNFTFPVSYCVTEFFPECEEARNIAAKESERKENELSEKMS LENEVSALKSEISSLQQRGSLDAKGRDREIGLLREQVSETNKLKELLEKEKRRADAEKKNAETEKRRAAEAQKRMKAEKVKAVEENKHADVETKKAEGYR VQLEVLKKDVEDMNSLLISEREEKARYLAIKTSLENEVSVLQSEISCLKKECAAGQQKEKETQNASEIFENANVENAGADRKHGGYCENTAETCLLQLQA LMKEVEETKSMLVFEKEEHRKEVARRLLLEEEIVGLKSQICWLQQRGDEDIHGEIELLKGSLGGKEEEIRKLKELFDKVISQLNSEKKKVEVQKKIADEA CERVKAEKSKLVTESKNASYEAKKAEKFQVQLDYLKKDFLKVQSELESEKEKFSMMKEKREVERQNVIKARQSVEAEIAKADHQRKLAQANGKVSAKERA RADELSGQLELYKHKNEELQKQIQQFLHCQNSAELPGTLPVGKDKTKLTKMKLLKKQLKLGKMQLKHSKQVAEFEKHRNVILREELGNLRHDFVRISGRL DLLAKCFSPNVEGIADMKKHSVKQFPNLNCYTFQDGALGEIQYLMKGRKLYDIEPHQMYTKKESEDFNPDCGATATTNLMKHANMLSPTCDLNLSTSGID SQLESFQGGSNTKLLLHSSMHASSASFSDGELVHSQDRGEFVPLSEKMVEDNSDSQPTFPYVSAEVKSLPKRRNLSIDHYDHRDQVVLDAVESVKHLFME DKKLHLQMQEKFHLLHQILNGQQDVQLEEPTNLDPIIQYGSCDKLERLHKRRKLSPEDESVLKPVHDTVKPGNKKIFEGKVIGELDATSPNDVSIRAEQA FEETGKSYVKAVLDILPNFEDIADVDYMKLLELDNSAEEEIYKQAMEMPLSPTLPEISFPEALVLSDVPRNAELGSIHHEEALVLDTIDMELHCNESRGH GSKITHEGSRHEKEDLAGDVYSQSLEADKASSRWSGNCGYGPKTARIPTIFVTTYVEDSRSIYRVFSATKACMDYCAVNSHPHSMLQRILHAVRIQEKIS SMERSCVLFTLMVLNFSECKLVKTRRILYKDLIAYVDSLARDLQPVLSTAGGRSSFEEVCSLYELLGIIDDFLINGTIFECTNFTSDFRSEEELKFSRKS ATVEQMVVGSTLLSSICTSTGYLGFVCETSYNLLRKSRCDTAFLLTIFHVFAHVVREQYFSSNDFGLTMIVVRSIVGCLERKMSLVASSPTSRSSENTIE LQFICCQTCPFGAVSIDVVTSVLLEKLWGSEDPGTTRRTESTSLANSNLLSFEHNQVGEGIRGSKSIMNGTMGDTSNILSLLELVSCKMGWEWTHSKVIP ELLQMLERSVTTTFQIAAVLFLGEVGRFGVGASGSEDKGVESLTCKLSSFFCQLMAEEAIFSVQIATVASLLRLLFLDLPSIVDESFKCSTTASQSAAID LVRDWFSRLSKDRQATSLSFLQSQMDTR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Lus10023360 [exp]	0	1
AT3G55220		AtSAP130b, SAP1...	Arabidopsis thaliana spliceoso...		Lus10023443 [exp]	2.0	0.9433
AT5G09840			Putative endonuclease or glyco...		Lus10033511 [exp]	2.4	0.9418
AT2G30780			Tetratricopeptide repeat (TPR)...		Lus10042683 [exp]	4.9	0.9129
AT1G55930			CBS domain-containing protein ...		Lus10003111 [exp]	5.3	0.9177
AT5G39840			ATP-dependent RNA helicase, mi...		Lus10033404 [exp]	6.0	0.9300
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10043332 [exp]	8.2	0.9265
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Lus10022280 [exp]	9.7	0.9012
AT3G55220		AtSAP130b, SAP1...	Arabidopsis thaliana spliceoso...		Lus10040321 [exp]	10.8	0.9145
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043477 [exp]	13.6	0.9237
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10019482 [exp]	14.1	0.9211

Compare expression of checked genes

Lus10023360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.