Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34790 634 / 0 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT1G30760 618 / 0 FAD-binding Berberine family protein (.1) AT5G44400 599 / 0 FAD-binding Berberine family protein (.1) AT5G44390 550 / 0 FAD-binding Berberine family protein (.1) AT5G44380 509 / 2e-176 FAD-binding Berberine family protein (.1) AT5G44360 456 / 9e-156 FAD-binding Berberine family protein (.1) AT4G20860 436 / 1e-147 FAD-binding Berberine family protein (.1) AT1G30700 434 / 2e-147 FAD-binding Berberine family protein (.1) AT4G20820 423 / 6e-143 FAD-binding Berberine family protein (.1) AT1G26380 410 / 7e-138 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018119 [exp] 639 / 0 AT2G34790 641 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10036147 [exp] 636 / 0 AT2G34790 626 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038445 [exp] 612 / 0 AT1G30760 415 / 6e-141 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 476 / 2e-163 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10023375 [exp] 455 / 4e-155 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 448 / 2e-152 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10038446 [exp] 439 / 7e-149 AT4G20860 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10038436 [exp] 432 / 2e-146 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10023363 [exp] 431 / 5e-146 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G462800 [exp] 717 / 0 AT1G30760 659 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158700 [exp] 705 / 0 AT1G30760 664 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G463400 [exp] 665 / 0 AT1G30760 661 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159200 [exp] 654 / 0 AT5G44400 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159100 [exp] 654 / 0 AT5G44400 614 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G160400 [exp] 654 / 0 AT5G44400 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161500 [exp] 653 / 0 AT1G30760 632 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161300 [exp] 651 / 0 AT1G30760 624 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161400 [exp] 647 / 0 AT1G30760 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159600 [exp] 644 / 0 AT1G30760 642 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10023361 pacid=23181058 polypeptide=Lus10023361 locus=Lus10023361.g ID=Lus10023361.BGIv1.0 annot-version=v1.0 ATGGCTTCTCCTTCATCTTCATTCCTTCCTCTGTTTCTCCTCTGCCTCCTCTGTCTCTCCCCCGCTGTAACATTCTCCCGCAAAGTATCATCCCGATCAG CCGCCCAAGCCCAACAACACAGCTTCCTCCAATGCCTCTCCGACCACGCCGACATCTCAATCCCATTCTCCTCTTCCTTCTTCACCCCTGAAAACTCCAA CTTCTCCACCGTCCTCTCCTCCTCCGCCCAGAACCTCCGCTACTTACTCCCCGCCGTCCAGAAGCCAGTCTTCATCTTCACCCCTCTCCAAGTCTCCCAC ATCCAGTCCGCCGTCCTCTGCTCCAAGCAGCTCGGCATCCACCTCCGTCTCCCCGCCACCCCCCCCCGTCTCCGCAGCGGCGGCCATGACTACGAAGGCG TCTCCTACGCTGCTTCCTCCGCCTCCTCCTCCAGCTCCACCTCTTTCCTTATCCTCGACCTCTCCAAGCTCCGCGCTGTTGACGTCGATGTCGCCACCGA GACCGCATGGGTTCAAGCCGGAGCAACCGTCGGTGAAGCTTACTACCACATTTCGCAGAAGTCACCTGCCCATGGTTTCCCCGCCGGACTCTGTAGCAGC CTCGGCGTGGGAGGTCACATCACCGGCGGAGCTTACGGATCCATGATGAGGAAGTACGGCCTCGGCGCCGACAATGTTGTCGACGCTTTAATCGTCAACG CTGAAGGAAAACTCCTCGACCGTAAAGCAATGGGAGAAGACGTCTTTTGGGCCATCCGCGGCGGCGCCGGCGGAAGTTTCGGAGTGATCGTCGCCTGGAA ATTAAAACTCGTCCCTGTTCCGGCCACCGTAACTGTTTTCACCGTTCCCAAGACGCTTCAACAAGGAGCAACAAAAATACTCTACAAATGGCAGCAAGTC GCCGACAAGCTCGACGACGATCTTTTCATCAGAGTCATAATCAACACCGCCCGAATCGGAAACACGACGGAGAGAACCGTCGGGACGGCGTACCAAGCTC TGTTCCTTGGCGACTCCGCAAGACTGCTCAGAATCATGGCTACCAGCTTCCCCGAACTGGGTCTGACTAAAAAAGACTGCTTGGAAACCACATGGATCAA ATCGGTCCTCTACATCGCCGGATACCCAGCAAACACCCCGCCGGAAGCCCTCCTCGAAGGGAAATCTCTGTTCAAGAACTACTTCAAAGCCAAATCCGAT TTCGTTGAAGACCCAATTCCTGAATCTGGCCTCGAAGGTATATGGACGAGATTCCTCCAAGAAGACTCCCCGTTAACGATCTGGAACCCGTTCGGCGGGG AAATGGCCAGAATCTCCGAATCGGCGATTCCGTTCCCTCACCGGAAGGCGGCGTTCATGATCCAGTATTTGACCAACTGGCAAGACAGCGACAAGAAGAG TGAAGAAAGGCATATGGATTGGATGAGGAAGCTTTACAATTACATGACGCCGTACGTGACGATGATGCCGAGAGCGTCGTACGTGAATTACAGGGATTTG GATTTGGGGACGAACAAGGATTGTAATTCGAGCTTCATTGAAGCGAGCAGCTGGGGGCATAAGTATTTCAAAGACAATTTCAACAAGCTTGTGCAGGTGA AGACCAAGTTTGACCCGGAGAATTTCTTCCACCATGAACAGAGTATTCCGCCGTTGCCGGTGTCGATGAGGAAGAGGAACCGGAGAGGTGGGATCGGATT TTAA
AA sequence Show only first row Show all	>Lus10023361 pacid=23181058 polypeptide=Lus10023361 locus=Lus10023361.g ID=Lus10023361.BGIv1.0 annot-version=v1.0 MASPSSSFLPLFLLCLLCLSPAVTFSRKVSSRSAAQAQQHSFLQCLSDHADISIPFSSSFFTPENSNFSTVLSSSAQNLRYLLPAVQKPVFIFTPLQVSH IQSAVLCSKQLGIHLRLPATPPRLRSGGHDYEGVSYAASSASSSSSTSFLILDLSKLRAVDVDVATETAWVQAGATVGEAYYHISQKSPAHGFPAGLCSS LGVGGHITGGAYGSMMRKYGLGADNVVDALIVNAEGKLLDRKAMGEDVFWAIRGGAGGSFGVIVAWKLKLVPVPATVTVFTVPKTLQQGATKILYKWQQV ADKLDDDLFIRVIINTARIGNTTERTVGTAYQALFLGDSARLLRIMATSFPELGLTKKDCLETTWIKSVLYIAGYPANTPPEALLEGKSLFKNYFKAKSD FVEDPIPESGLEGIWTRFLQEDSPLTIWNPFGGEMARISESAIPFPHRKAAFMIQYLTNWQDSDKKSEERHMDWMRKLYNYMTPYVTMMPRASYVNYRDL DLGTNKDCNSSFIEASSWGHKYFKDNFNKLVQVKTKFDPENFFHHEQSIPPLPVSMRKRNRRGGIGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023361 [exp]	0	1
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Lus10041496 [exp]	3.5	0.9558
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10041651 [exp]	3.7	0.9557
AT1G05810		ARA, Ara-1, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10025876 [exp]	4.7	0.9315
AT1G04360			RING/U-box superfamily protein...		Lus10021197 [exp]	5.3	0.9368
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10008677 [exp]	7.1	0.9455
AT1G48850		EMB1144	embryo defective 1144, chorism...		Lus10036738 [exp]	7.9	0.9435
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10038044 [exp]	8.0	0.9430
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10026097 [exp]	9.2	0.9459
AT3G19460			Reticulon family protein (.1.2...		Lus10027867 [exp]	10.2	0.9256
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10035681 [exp]	11.2	0.9316

Compare expression of checked genes

Lus10023361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.