Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30760 489 / 2e-169 FAD-binding Berberine family protein (.1) AT2G34790 475 / 3e-164 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT5G44400 475 / 5e-164 FAD-binding Berberine family protein (.1) AT5G44440 473 / 2e-163 FAD-binding Berberine family protein (.1) AT5G44380 472 / 9e-163 FAD-binding Berberine family protein (.1) AT5G44390 469 / 9e-162 FAD-binding Berberine family protein (.1) AT4G20820 468 / 3e-161 FAD-binding Berberine family protein (.1) AT4G20860 460 / 4e-158 FAD-binding Berberine family protein (.1) AT1G30700 452 / 3e-155 FAD-binding Berberine family protein (.1) AT5G44360 452 / 4e-155 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038442 [exp] 629 / 0 AT5G44390 389 / 8e-132 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 491 / 3e-170 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 481 / 4e-166 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10038446 [exp] 471 / 2e-162 AT4G20860 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10023375 [exp] 466 / 3e-160 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10038436 [exp] 464 / 1e-159 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 459 / 7e-158 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10023361 [exp] 460 / 1e-157 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10018119 [exp] 459 / 1e-157 AT2G34790 641 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G158600 [exp] 617 / 0 AT1G30760 499 / 5e-173 FAD-binding Berberine family protein (.1) Potri.001G462700 [exp] 613 / 0 AT1G30760 525 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161800 [exp] 544 / 0 AT5G44360 550 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G440700 [exp] 529 / 0 AT4G20820 552 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162800 [exp] 516 / 2e-180 AT5G44440 540 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G470100 [exp] 515 / 6e-180 AT1G30700 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162732 [exp] 513 / 6e-179 AT4G20820 534 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158100 [exp] 513 / 8e-179 AT5G44440 519 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461900 [exp] 513 / 8e-179 AT4G20820 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162856 [exp] 512 / 1e-178 AT5G44440 545 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10023363 pacid=23180958 polypeptide=Lus10023363 locus=Lus10023363.g ID=Lus10023363.BGIv1.0 annot-version=v1.0 ATGCTTGCTTTGTTCATCTTCCTAGCTTCAATCCTCCTCCCTGCAACTTCATCAACTCCACCTCAAACATTCCACCGTTGCTTTTCCAATGGCTTCAACA ATAACCAATCCCAAGTCCTCATTCCGGCAAGCTCCCCGCTTTATTCCTCCGTCTTGAACTCTTTGATTCGAAACCTCAGGTTCACCAACGCCTCGGGATT CTCGAAACCCACATTCATAGTCGTTCCGTTTGAGGAATCCCATGTCCAGAAGGCGGTGATTTGCGCTAAGAATTCCGGTTTACAAGTCCGGACGAGGAGT GGAGGCCACGACTACGAGGGCTTATCTTACACCTCCCATACGGAGTTTGTGCTCGTTGATCTTTCTCGCTTCAGGTCCATCGAAATCGACATAAACAACG AGACCGCTTGGGTGGAGACGGGTGCCATGCTAGGCGAATTGTACTACGAAATCGCCAAAAAGAGCCGTGTCCATGGCTTTCCAGGTGGAAGCTGTCCAAC GGTAGGGGTTGGAGGCCACTTTAGCGGAGGCGGATTCGGCTTAATTATGAGGAAATACGGGCTGGCAGCGGATACAGTCGTGGATGCCAAGATCATCGAT GTAAACGGAAAAATTCTGGACCGGAATTCGATGGGAGAAGACCTGTTCTGGGCGATCAGGGGCGGTGGCGGAGCTAGCTTCGGCGTTATCCTGTCCTGGA AAGTTCGATTAGTTTCAGTTCCGGAAACCGTAACAATTTTCAGCCGGACCAGGACCCTGGAGCAAAACGGTAGTGAAGTGTTACAGAAATGGCAAAACCT GAGTCACAATCTCCATCAGGAAATTTTCCTCCACACAGTAATTAGAGTCGGCAAAAACAGAGCAATTCAGTTGTCATTTACAGGGCTTTATCTGGGAAGA ATGAACGAATTCCTCTCTCTGATGAACGAAAGCTTCCCGGAGTTAGGGTTAGCGGCCGAAACCTGTCAGGAAGTCACCTGGATACAATCCGTAATGTACT TTGCCAATTTCGGAGTAAACGACTCAACGAACCGACTGATTAACCGAACTTCCGGATCGAAAGATTTCTTCAAGGCGAAATCCGATTATGTGAAGGAACC GATTTCAAATTCGGCGCTGAAGGGGCTTTACAAACGGGTCCTGAAACAGGACTCGTCGTTCCTGATCCTGACTCCTTATGGCGGCAGGATGAGGGAGATA CCCGAGTCGGCAACACCGTTCCCTCACAGGAAAGGTTACTTGTATAAGATTCAGTATGTGGCGTCTTGGGATGAGGAGGAGGAAACGGAAGAGAAGCTCG GATGGATCAGAGAGCTGTACGGATATATGACCCCGTTTGTTTCGAAAGATCCTCGAGCTGCTTACGTGAATTACCGAGATCTCGATTTGGGTTCGAACTG GGGGGTGAAATACTTCAAGGGGAACTTCGATAGACTTGTAAAAGTGAAGACCCAAGTGGATCCTGATAATTTCTTCAACAATGAACAGAGCATTCCTGTT CTATCTTAG
AA sequence Show only first row Show all	>Lus10023363 pacid=23180958 polypeptide=Lus10023363 locus=Lus10023363.g ID=Lus10023363.BGIv1.0 annot-version=v1.0 MLALFIFLASILLPATSSTPPQTFHRCFSNGFNNNQSQVLIPASSPLYSSVLNSLIRNLRFTNASGFSKPTFIVVPFEESHVQKAVICAKNSGLQVRTRS GGHDYEGLSYTSHTEFVLVDLSRFRSIEIDINNETAWVETGAMLGELYYEIAKKSRVHGFPGGSCPTVGVGGHFSGGGFGLIMRKYGLAADTVVDAKIID VNGKILDRNSMGEDLFWAIRGGGGASFGVILSWKVRLVSVPETVTIFSRTRTLEQNGSEVLQKWQNLSHNLHQEIFLHTVIRVGKNRAIQLSFTGLYLGR MNEFLSLMNESFPELGLAAETCQEVTWIQSVMYFANFGVNDSTNRLINRTSGSKDFFKAKSDYVKEPISNSALKGLYKRVLKQDSSFLILTPYGGRMREI PESATPFPHRKGYLYKIQYVASWDEEEETEEKLGWIRELYGYMTPFVSKDPRAAYVNYRDLDLGSNWGVKYFKGNFDRLVKVKTQVDPDNFFNNEQSIPV LS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023363 [exp]	0	1
AT1G07520	GRAS		GRAS family transcription fact...		Lus10037757 [exp]	3.2	0.8708
AT2G34930			disease resistance family prot...		Lus10033931 [exp]	4.9	0.8107
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031726 [exp]	5.2	0.8497
AT1G65820			microsomal glutathione s-trans...		Lus10020792 [exp]	5.7	0.8657
AT5G15100		ATPIN8, PIN8	PIN-FORMED 8, Auxin efflux car...		Lus10013422 [exp]	6.5	0.8147
					Lus10014189 [exp]	6.6	0.7193
AT4G39700			Heavy metal transport/detoxifi...		Lus10022508 [exp]	6.7	0.8372
AT2G28105			unknown protein		Lus10016142 [exp]	7.0	0.7150
AT1G75290			NAD(P)-binding Rossmann-fold s...		Lus10021709 [exp]	7.2	0.8380
AT5G44440			FAD-binding Berberine family p...		Lus10003646 [exp]	7.2	0.7807

Compare expression of checked genes

Lus10023363 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.