Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07820 111 / 5e-30 Pectin lyase-like superfamily protein (.1) AT3G14040 110 / 2e-29 Pectin lyase-like superfamily protein (.1) AT3G07850 107 / 3e-28 Pectin lyase-like superfamily protein (.1) AT3G07830 106 / 5e-28 Pectin lyase-like superfamily protein (.1) AT4G18180 106 / 6e-28 Pectin lyase-like superfamily protein (.1) AT5G48140 105 / 7e-28 Pectin lyase-like superfamily protein (.1) AT3G07840 103 / 4e-27 Pectin lyase-like superfamily protein (.1) AT2G43880 101 / 4e-26 Pectin lyase-like superfamily protein (.1) AT2G43870 101 / 4e-26 Pectin lyase-like superfamily protein (.1) AT3G59850 96 / 3e-24 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039154 [exp] 124 / 9e-35 AT5G48140 335 / 8e-113 Pectin lyase-like superfamily protein (.1) Lus10013784 [exp] 122 / 9e-34 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10013780 [exp] 122 / 9e-34 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10003001 [exp] 122 / 5e-33 AT3G07840 362 / 1e-118 Pectin lyase-like superfamily protein (.1) Lus10041059 [exp] 120 / 5e-33 AT3G07830 310 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10041058 [exp] 120 / 6e-33 AT3G07830 311 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10009606 [exp] 116 / 1e-31 AT3G07840 323 / 4e-108 Pectin lyase-like superfamily protein (.1) Lus10043088 [exp] 115 / 2e-31 AT3G07820 360 / 6e-123 Pectin lyase-like superfamily protein (.1) Lus10038316 [exp] 107 / 6e-31 AT3G14040 92 / 3e-23 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G067166 [exp] 134 / 1e-38 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067200 [exp] 134 / 1e-38 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067133 [exp] 134 / 1e-38 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067100 [exp] 133 / 4e-38 AT3G07820 404 / 5e-140 Pectin lyase-like superfamily protein (.1) Potri.019G066800 [exp] 130 / 3e-37 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067000 [exp] 130 / 3e-37 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067050 [exp] 130 / 3e-37 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.007G035800 [exp] 126 / 1e-35 AT3G07820 350 / 7e-119 Pectin lyase-like superfamily protein (.1) Potri.014G162300 [exp] 106 / 2e-28 AT3G07850 358 / 3e-122 Pectin lyase-like superfamily protein (.1) Potri.010G007300 [exp] 105 / 1e-27 AT4G18180 289 / 2e-94 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10023364 pacid=23181082 polypeptide=Lus10023364 locus=Lus10023364.g ID=Lus10023364.BGIv1.0 annot-version=v1.0 ATGGTAACAAACCTGACTTGTGGGCCCGGACACGGTACCAGCATTGGAAGTTTGGGAAAGTATCCCGACGAGAAGTGTGTCAAGAATGTCATTGTCAAAA ACGGCACTTTGACAGATACTGATAACGTCGGTGTCAGTATCAAGTTGTGGCCAAATCTGTTCCCAGGAGAAGCATCTGACGTACATTTCAAAGATATCAT AATGAACAAAGTGAATAACCCGATAATCATCGATCAGACTTGCTGCCCGGGGCATACATGCGGTGCGAACAGGATCGCTTCAAAGGTTAAGATCAACAAC GTGGTGTTCAAGAACATCAAGGGGACTTCCAAGAATCCAGATGGCGAATTCATGGCGGAATTCATGACCACAGATGGATTCACAACGATGAAGATTGTGA TTATCGGAGGTTCGTCGTAG
AA sequence Show only first row Show all	>Lus10023364 pacid=23181082 polypeptide=Lus10023364 locus=Lus10023364.g ID=Lus10023364.BGIv1.0 annot-version=v1.0 MVTNLTCGPGHGTSIGSLGKYPDEKCVKNVIVKNGTLTDTDNVGVSIKLWPNLFPGEASDVHFKDIIMNKVNNPIIIDQTCCPGHTCGANRIASKVKINN VVFKNIKGTSKNPDGEFMAEFMTTDGFTTMKIVIIGGSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14040			Pectin lyase-like superfamily ...		Lus10023364 [exp]	0	1
AT3G16180			Major facilitator superfamily ...		Lus10009506 [exp]	1.7	1.0000
					Lus10033149 [exp]	2.4	1.0000
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10023215 [exp]	3.0	1.0000
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10003281 [exp]	4.5	1.0000
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10027028 [exp]	5.3	1.0000
AT1G29430			SAUR-like auxin-responsive pro...		Lus10020441 [exp]	5.7	1.0000
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10005213 [exp]	6.0	0.9900
AT3G24140	bHLH	bHLH097, FMA	FAMA, basic helix-loop-helix (...		Lus10007138 [exp]	6.3	0.9823
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10006200 [exp]	6.5	1.0000
AT4G30030			Eukaryotic aspartyl protease f...		Lus10011612 [exp]	6.5	0.9333

Compare expression of checked genes

Lus10023364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.