Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20830 491 / 1e-169 FAD-binding Berberine family protein (.1.2) AT1G11770 488 / 9e-169 FAD-binding Berberine family protein (.1) AT1G01980 483 / 1e-166 ATSEC1A FAD-binding Berberine family protein (.1) AT4G20840 482 / 2e-166 FAD-binding Berberine family protein (.1) AT1G30740 458 / 6e-157 FAD-binding Berberine family protein (.1) AT1G30700 447 / 1e-152 FAD-binding Berberine family protein (.1) AT1G30710 441 / 3e-150 FAD-binding Berberine family protein (.1) AT1G34575 429 / 1e-145 FAD-binding Berberine family protein (.1) AT4G20820 409 / 7e-138 FAD-binding Berberine family protein (.1) AT1G30730 409 / 1e-137 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038439 [exp] 452 / 1e-154 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10035466 [exp] 447 / 9e-153 AT1G30700 585 / 0.0 FAD-binding Berberine family protein (.1) Lus10023375 [exp] 442 / 2e-150 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10009009 [exp] 421 / 2e-142 AT1G30700 534 / 0.0 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 404 / 8e-136 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10023366 [exp] 399 / 1e-135 AT1G11770 490 / 2e-171 FAD-binding Berberine family protein (.1) Lus10023363 [exp] 398 / 8e-134 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038436 [exp] 391 / 8e-131 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 390 / 2e-130 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G158500 [exp] 558 / 0 AT1G01980 671 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462600 [exp] 549 / 0 AT1G01980 658 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462200 [exp] 491 / 9e-170 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158400 [exp] 479 / 4e-165 AT1G34575 649 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462400 [exp] 474 / 2e-163 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G470100 [exp] 470 / 1e-161 AT1G30700 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158300 [exp] 458 / 3e-157 AT1G30700 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G440700 [exp] 434 / 2e-147 AT4G20820 552 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459500 [exp] 433 / 3e-147 AT4G20800 559 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461500 [exp] 433 / 3e-147 AT4G20820 519 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10023365 pacid=23181093 polypeptide=Lus10023365 locus=Lus10023365.g ID=Lus10023365.BGIv1.0 annot-version=v1.0 ATGGCAAACTCATCCTGTACAGTTTTCCCAATCGTTCTTCTTCTCCTCCTCCTAGCTAGTTCTTCCGATTCTTCAAATGACACCTCCTCGATCTACAAGA ACTTTCTTCAGTGCCTCACGCAAACTTCCAAGACACCACCGGATCAAATCTCGGACCTGGTCTACACGCCGCGGAATTCGTCCTATTCCTCTGTTTTACA ATCCTACGAACGAAACGCCAGGTTCAACTCTTCAAGGAAGCCTCTGATCATCGTCACACCTATGGAAATCCCTCACGTCCAGTCGACGGTGATCTGCACC AGAAGACTCGGCGGTAATTACAGTCTCAGAATCCGCAGCGGGGGCCACGATTTCGAAGGGCTATCCTATGTCTCTGACTCCTCCCCTTTCTTCCTGCTTG ACATGTCGAACCTTCGTTCGATCGATGTAGACATCGGAACGAACACGTCATGGGTTCAGTCCGGTGCCATTCTAGGCGAACTCTACTATGCAATATGGCA GAAGAGTAAAGTCCACGGCTTCCCGGCCGGAGCATGCGCCACGGTTGGCGTTGGTGGTCATTTCAGTGGCGCGGGATTCGGCAACATGATGAGGAAGTTC GGACTTTCTGTTGACCATATCGTCGACGCACATATAGTCAACGTCGAAGGAAAGCTTCTCGACCGAAAGTCCATGGGAGAAGGCCTCTTTTGGGCAATTC TCGGTGGTGGAGGAGCCAGCTTCGGCGTGGTCGTCTCGTATAAGATCAAGCTCGTCGAGGTACCAGGAACCGTCACGGTTTTCAACAAGGAGAAGGATCC ATCGGAGAGTTTGTCCGATTTCGTGTACCGGTGGCAGTTTGTAGCTCCGAACGCTAGCAATGATTTGTTCATGAGGCTACACTTGTCTCAAACGACGGCT TCGATTCAGGCATTGTACTTGGGAAAAGCTGACGAGGTTGTATCCTTGTTGAATAAGGATTTCCCTGAACTGGGATTAACTACTGAGGACTGTAAGGAAA TGAGCTGGATCGATTCAGTGTTGTGGTACGGAACTCCGGACTACGGGAAGTCTCCGGATGCACTTCTAAATCGGTACCCGGTTAGCCCCTCCAACCCAGC CGGATCTGCCAAGAGGAAGTCCGATTTCGTGGTGAATCCGGTGAGCAGAGAAGGGGTGGACAGGATCATAAACCGGTTGATCCAACTGCCGAAAATTAAG ATGACATTGAATCCGTACGGAGGGGAAATGAGCGAGATTTCTTGGGCCGAAACTCCGTTTCCACACAGGAAAGGGAACCTGTACATGGTTGACTACGTCG GGAATTGGGACGCTCCGGGGGAGGAGGCTGCAAAAGATGTGACGGGCGAGTTGAGGAGTATGTACGATTATATGACCGAGTTCGTGTCGAGTAATCCGAG GAGGGCGTATTTGAACTACCGGGATCTCGACATTGGGAAGATGGAGCCTGGGGATGGATATGAAGAAGGAAGAGTTTATGGGATGAAGTATTTTAGTGGG AATTTTGATAGGTTGGTGAGGGTGAAAACTAAGGTTGATCCTGGCAATTTTTTCAGTAGTGTGCAGAGTGTTCCAACACTTCGTAGAAAGGTTTGA
AA sequence Show only first row Show all	>Lus10023365 pacid=23181093 polypeptide=Lus10023365 locus=Lus10023365.g ID=Lus10023365.BGIv1.0 annot-version=v1.0 MANSSCTVFPIVLLLLLLASSSDSSNDTSSIYKNFLQCLTQTSKTPPDQISDLVYTPRNSSYSSVLQSYERNARFNSSRKPLIIVTPMEIPHVQSTVICT RRLGGNYSLRIRSGGHDFEGLSYVSDSSPFFLLDMSNLRSIDVDIGTNTSWVQSGAILGELYYAIWQKSKVHGFPAGACATVGVGGHFSGAGFGNMMRKF GLSVDHIVDAHIVNVEGKLLDRKSMGEGLFWAILGGGGASFGVVVSYKIKLVEVPGTVTVFNKEKDPSESLSDFVYRWQFVAPNASNDLFMRLHLSQTTA SIQALYLGKADEVVSLLNKDFPELGLTTEDCKEMSWIDSVLWYGTPDYGKSPDALLNRYPVSPSNPAGSAKRKSDFVVNPVSREGVDRIINRLIQLPKIK MTLNPYGGEMSEISWAETPFPHRKGNLYMVDYVGNWDAPGEEAAKDVTGELRSMYDYMTEFVSSNPRRAYLNYRDLDIGKMEPGDGYEEGRVYGMKYFSG NFDRLVRVKTKVDPGNFFSSVQSVPTLRRKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11770			FAD-binding Berberine family p...		Lus10023365 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10006928 [exp]	4.1	0.9079
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10006827 [exp]	10.4	0.8776
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10007796 [exp]	12.8	0.8904
AT3G53990			Adenine nucleotide alpha hydro...		Lus10022602 [exp]	13.2	0.9009
AT1G44970			Peroxidase superfamily protein...		Lus10010634 [exp]	17.5	0.8775
AT5G05390		LAC12	laccase 12 (.1)		Lus10042252 [exp]	18.0	0.8792
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	19.6	0.8868
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Lus10028678 [exp]	23.3	0.8768
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10004733 [exp]	24.4	0.8706
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Lus10039133 [exp]	29.5	0.8671

Compare expression of checked genes

Lus10023365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.