Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11770 485 / 2e-169 FAD-binding Berberine family protein (.1) AT4G20840 481 / 8e-168 FAD-binding Berberine family protein (.1) AT1G01980 470 / 2e-163 ATSEC1A FAD-binding Berberine family protein (.1) AT4G20830 458 / 8e-159 FAD-binding Berberine family protein (.1.2) AT1G30740 439 / 2e-151 FAD-binding Berberine family protein (.1) AT1G30710 409 / 8e-140 FAD-binding Berberine family protein (.1) AT1G30700 409 / 1e-139 FAD-binding Berberine family protein (.1) AT1G34575 400 / 3e-136 FAD-binding Berberine family protein (.1) AT1G30720 387 / 3e-131 FAD-binding Berberine family protein (.1) AT4G20820 387 / 4e-131 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038440 [exp] 617 / 0 AT1G11770 403 / 4e-135 FAD-binding Berberine family protein (.1) Lus10023365 [exp] 421 / 3e-144 AT1G11770 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 421 / 3e-144 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10035466 [exp] 414 / 1e-141 AT1G30700 585 / 0.0 FAD-binding Berberine family protein (.1) Lus10023375 [exp] 411 / 2e-140 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10009009 [exp] 405 / 5e-138 AT1G30700 534 / 0.0 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 376 / 1e-126 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10023361 [exp] 376 / 4e-126 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038436 [exp] 373 / 1e-125 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G462600 [exp] 541 / 0 AT1G01980 658 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158500 [exp] 529 / 0 AT1G01980 671 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G470100 [exp] 452 / 2e-156 AT1G30700 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158300 [exp] 444 / 7e-154 AT1G30700 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158400 [exp] 444 / 3e-153 AT1G34575 649 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462200 [exp] 439 / 2e-151 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461900 [exp] 424 / 2e-145 AT4G20820 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G440700 [exp] 422 / 1e-144 AT4G20820 552 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462400 [exp] 420 / 6e-144 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461700 [exp] 420 / 7e-144 AT4G20820 545 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10023366 pacid=23180969 polypeptide=Lus10023366 locus=Lus10023366.g ID=Lus10023366.BGIv1.0 annot-version=v1.0 ATGTCAACCCCCCGCAAAACCCAAATCGACGCCGCCGACCAGTCCGGTTGGGTCCAGGCCGGCGCCACCTTAGGCGAGCTCTACTACGCCATCTCGCAAA AAAGTACCCTCCTTGGCTTCCCCGCCGGTGTATGCCCCACCGTTGGCGTGGGAGGTCACCTCAGCGGCGGCGGATACGGCAATCTCCTGAGAAAGCACGG TCTTTCCGTTGACCACATCGTCGACGCACAGATAGTCGACGCCGCCGGGAAATTCCACGACGGGAGAGCTTCCATGGGGGAAGATCTGTTCTGGGCGATT CGAGGAGGCGGAGGTGCGAGCTTCGGAGTGGTAATTGCGTACAAGATTAAGCTCGTTCCGGTGCCGGCGACGGTTACTGTTTTCCGAGTGGAAAAATATC AAGAACAGAACGCAACTGACATGGTTTACAAATGGCAGTTCGTGGCTCCGAAAACGACGGACGATCTCTTCATGAGGATGCTGTTACAGCCTGTGAGCTC CAAGACGAAGAAAGGAACACTCACGGTGCGAGCTTCGATTCTGGCAGAGTATTTGGGCACCGCCGATATACTGGTGGCGTTGATGGGTAAGGAATTCCCC GAATTGGGTTTGAAGAAATCTGATTGTTTGGAAATGAGCTGGATACAATCGGTTCTTTGGTGGGGATTCAACAACCAGACGAATCCGAAAGCGCTGACAA GCAGAGTGCCGGAATCGGTCAATTTCGGGAAGAGGAAATCGGATTACGTCCAGAATCCGATTTCGAAAGCGAATCTGGAGTGGATTTGGAAGAAGATGGT TGAGTCAGGGAAGACAGGGTTCGTATTCAACCCGTACGGCGGGAGGATGGACGAAATTGGGGAAACGGAGACGCCGTTTCCTCACCGGAAGGGGAATCTG TGGAAGATTCAGTACTCTATAGGTTGGAAAGATGCAGGGGAGAAGGCGGAGAAAGATTACTTGAGTCAGATCAGGAGGATTTACAGTTACATGACGCCGT TCGTGAGCAAGAATCCGAGGGGTGCGTATTTGAATTACAGGGATTTGGATATCGGCACCGGGCAGCCTGGGAAAAATAGCTACAATGATGGGAAAGTTTA TGGTGATAAGTACTTTAGTGTGAATTTCGATAGGTTGGTGAAAGTGAAGACTGCTGTGGATCCTGGTAATTTCTTTTGGAATGAACAGAGCATCCCCGTT CTTCCAAGTAAGGCTTACAGAGAGTGA
AA sequence Show only first row Show all	>Lus10023366 pacid=23180969 polypeptide=Lus10023366 locus=Lus10023366.g ID=Lus10023366.BGIv1.0 annot-version=v1.0 MSTPRKTQIDAADQSGWVQAGATLGELYYAISQKSTLLGFPAGVCPTVGVGGHLSGGGYGNLLRKHGLSVDHIVDAQIVDAAGKFHDGRASMGEDLFWAI RGGGGASFGVVIAYKIKLVPVPATVTVFRVEKYQEQNATDMVYKWQFVAPKTTDDLFMRMLLQPVSSKTKKGTLTVRASILAEYLGTADILVALMGKEFP ELGLKKSDCLEMSWIQSVLWWGFNNQTNPKALTSRVPESVNFGKRKSDYVQNPISKANLEWIWKKMVESGKTGFVFNPYGGRMDEIGETETPFPHRKGNL WKIQYSIGWKDAGEKAEKDYLSQIRRIYSYMTPFVSKNPRGAYLNYRDLDIGTGQPGKNSYNDGKVYGDKYFSVNFDRLVKVKTAVDPGNFFWNEQSIPV LPSKAYRE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11770			FAD-binding Berberine family p...		Lus10023366 [exp]	0	1
AT5G48540			receptor-like protein kinase-r...		Lus10038227 [exp]	1.0	0.9461
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10012978 [exp]	1.4	0.9369
AT1G05810		ARA, Ara-1, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10038226 [exp]	1.7	0.9318
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10028594 [exp]	5.0	0.9204
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10000453 [exp]	8.1	0.8980
AT3G57120			Protein kinase superfamily pro...		Lus10029720 [exp]	9.2	0.8924
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10002296 [exp]	9.8	0.8932
AT3G18715		IDL4	inflorescence deficient in abs...		Lus10020848 [exp]	10.2	0.8961
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10017693 [exp]	10.2	0.8873
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10025819 [exp]	10.4	0.9045

Compare expression of checked genes

Lus10023366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.