Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34575 164 / 1e-48 FAD-binding Berberine family protein (.1) AT5G44440 160 / 3e-47 FAD-binding Berberine family protein (.1) AT1G30760 158 / 2e-46 FAD-binding Berberine family protein (.1) AT1G30710 157 / 4e-46 FAD-binding Berberine family protein (.1) AT4G20800 157 / 6e-46 FAD-binding Berberine family protein (.1) AT4G20820 155 / 2e-45 FAD-binding Berberine family protein (.1) AT1G30700 155 / 3e-45 FAD-binding Berberine family protein (.1) AT1G26380 154 / 5e-45 FAD-binding Berberine family protein (.1) AT1G26420 153 / 1e-44 FAD-binding Berberine family protein (.1) AT1G26400 152 / 4e-44 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038439 [exp] 291 / 1e-97 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10023361 [exp] 168 / 6e-50 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10018119 [exp] 167 / 6e-50 AT2G34790 641 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10036147 [exp] 163 / 2e-48 AT2G34790 626 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10023366 [exp] 161 / 2e-48 AT1G11770 490 / 2e-171 FAD-binding Berberine family protein (.1) Lus10035466 [exp] 159 / 6e-47 AT1G30700 585 / 0.0 FAD-binding Berberine family protein (.1) Lus10023368 [exp] 151 / 7e-46 AT1G26420 205 / 2e-62 FAD-binding Berberine family protein (.1) Lus10026775 [exp] 153 / 2e-44 AT5G44390 448 / 5e-153 FAD-binding Berberine family protein (.1) Lus10008410 [exp] 151 / 3e-44 AT5G44390 436 / 8e-149 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G470100 [exp] 202 / 3e-63 AT1G30700 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158400 [exp] 186 / 8e-57 AT1G34575 649 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161800 [exp] 185 / 2e-56 AT5G44360 550 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G440700 [exp] 180 / 7e-55 AT4G20820 552 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G156000 [exp] 176 / 2e-53 AT4G20800 597 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459100 [exp] 171 / 2e-51 AT4G20800 623 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158000 [exp] 171 / 3e-51 AT5G44440 438 / 4e-149 FAD-binding Berberine family protein (.1) Potri.011G159600 [exp] 170 / 4e-51 AT1G30760 642 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161100 [exp] 170 / 7e-51 AT1G30760 639 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G160900 [exp] 170 / 8e-51 AT1G30760 646 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023367 pacid=23181033 polypeptide=Lus10023367 locus=Lus10023367.g ID=Lus10023367.BGIv1.0 annot-version=v1.0 ATGCGGAAGTACGGACTGTCGGTGGATAATGTCCTTGACGCGATTGTTGTCGATGCCGATGCTAGGGTTCTGGATAGGGAATCGATGGGGGAGGATTTCT TTTGTGCGATTAACAGCGGCGGGGGAGCTAGCTTCGCCGTTATCGCGTCGTGGGAAATTAGACTCGTCGACGTTCCCGCAAACGTAACCGTCTTCAGTGT CGAGCGGACTTTGGAGCAAGGAGCGCCCGACGTCGTTTACAGATGGCAGCTCGTCGCTGCTGACAATGTACACAATGACGTGTTCATTAGGGTCGTGTTG ATTCCGGTGGCGAAACACGGCGGAGGAGGAGAATCTGAATCTTTGACGGTCAAAGCGAAATTCAATGCTCTGTTCCTGGGAAGCCCAGAGAGGCTTGTGG GGTTGATGGATGAACAATTTCCAGAACTGGGGTTGACTCGGAATGACTGTTTGGAAATGAGCTGGATCTAA
AA sequence Show only first row Show all	>Lus10023367 pacid=23181033 polypeptide=Lus10023367 locus=Lus10023367.g ID=Lus10023367.BGIv1.0 annot-version=v1.0 MRKYGLSVDNVLDAIVVDADARVLDRESMGEDFFCAINSGGGASFAVIASWEIRLVDVPANVTVFSVERTLEQGAPDVVYRWQLVAADNVHNDVFIRVVL IPVAKHGGGGESESLTVKAKFNALFLGSPERLVGLMDEQFPELGLTRNDCLEMSWI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44440			FAD-binding Berberine family p...		Lus10023367 [exp]	0	1
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Lus10034504 [exp]	3.2	0.8542
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10022111 [exp]	4.7	0.8180
AT5G66550			Maf-like protein (.1)		Lus10040204 [exp]	7.3	0.8097
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10034739 [exp]	8.9	0.7719
AT1G69080			Adenine nucleotide alpha hydro...		Lus10036814 [exp]	9.2	0.7688
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10018674 [exp]	11.5	0.7886
AT5G04050			RNA-directed DNA polymerase (r...		Lus10036278 [exp]	15.0	0.7780
					Lus10026028 [exp]	27.3	0.7239
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10028944 [exp]	32.5	0.6629
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10007748 [exp]	34.5	0.7409

Compare expression of checked genes

Lus10023367 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.