Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26420 206 / 6e-63 FAD-binding Berberine family protein (.1) AT1G26400 201 / 3e-61 FAD-binding Berberine family protein (.1) AT1G34575 199 / 4e-60 FAD-binding Berberine family protein (.1) AT2G34810 197 / 3e-59 FAD-binding Berberine family protein (.1) AT1G26380 196 / 4e-59 FAD-binding Berberine family protein (.1) AT2G34790 194 / 3e-58 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT5G44390 193 / 9e-58 FAD-binding Berberine family protein (.1) AT1G30710 192 / 1e-57 FAD-binding Berberine family protein (.1) AT1G26410 192 / 3e-57 FAD-binding Berberine family protein (.1) AT4G20840 189 / 2e-56 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023373 [exp] 253 / 1e-83 AT1G34575 283 / 2e-92 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 223 / 2e-69 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10023361 [exp] 220 / 9e-68 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10023375 [exp] 213 / 3e-65 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10018119 [exp] 211 / 2e-64 AT2G34790 641 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10036147 [exp] 209 / 5e-64 AT2G34790 626 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10023365 [exp] 199 / 5e-60 AT1G11770 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10023366 [exp] 186 / 2e-56 AT1G11770 490 / 2e-171 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 189 / 3e-56 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G158400 [exp] 236 / 2e-74 AT1G34575 649 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G155900 [exp] 231 / 2e-72 AT4G20800 617 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161100 [exp] 228 / 4e-71 AT1G30760 639 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159600 [exp] 227 / 6e-71 AT1G30760 642 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G160900 [exp] 226 / 3e-70 AT1G30760 646 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459100 [exp] 221 / 8e-69 AT4G20800 623 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158300 [exp] 221 / 9e-69 AT1G30700 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.006G128900 [exp] 221 / 2e-68 AT1G30760 638 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G156000 [exp] 218 / 3e-67 AT4G20800 597 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G470100 [exp] 216 / 1e-66 AT1G30700 543 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023368 pacid=23180951 polypeptide=Lus10023368 locus=Lus10023368.g ID=Lus10023368.BGIv1.0 annot-version=v1.0 ATGTCTAGTTTACCACTCTTTTATGTTGGTGATATATACACTTTACAAGTCTGTTATGCGTTTTTATTATATCATTTTAATAGGCTCATTATGTTGACTT CATATATAAATTATTATATCCATATTACATCATTATTACATTATTGTTATCTCATTATTATATCCATTCCGGAGAAGAGCAATGTGCATGCTTTTGCCGC CGGAGTGTGCCCTTCGTTGGGTGCCGAAGGCCATATCTCTGGAGGTGGGTACGGGAATATGATCCGGAAGTTTGGATTGTCTGTGGATAACGTTGTTGAT GCTCAGATTATAAATGCGAAAGGGGATTTGCTTGATCGGAAATCGATGGGGGAGGATTTGTTCTGGGCGATCAGAGGAGGCGGTGGGGCTAGCTTCGGTG TGATCATGGCCTGGAAAATCAAACTGGTCAAGGTTCCTGAAAGGGTGACTGTATTCAAGGTGGAGAGAAATGTGGAACAAGGACTGACACTGTTGGTCGT GAAATATCAAGAAATCGCTCCTAAATTCGAGTCTGAGCTCTTCCTCAGAGCCTTTTTTTCCACGGAGAAAGTAAATGGCACTGAGAAAGGGTCCAACGCT ACGATGACGGTCAAAGGGAAATTCATGGCACAGTACCTTGGCGAGCCAGACAAGCTCCTAACCCTAATCAAGACACAATTCCCGGAACTCGGGATACTGC CTACCGACTGTACCCCAATGAGATGGGTCGACACGACCCTGTACTGGTACAGAATGCCTAACGACACCAAGATCGACTACCTCATCCAGAGGGCGTCCAA GTACCAATCGTACTTGAAATGA
AA sequence Show only first row Show all	>Lus10023368 pacid=23180951 polypeptide=Lus10023368 locus=Lus10023368.g ID=Lus10023368.BGIv1.0 annot-version=v1.0 MSSLPLFYVGDIYTLQVCYAFLLYHFNRLIMLTSYINYYIHITSLLHYCYLIIISIPEKSNVHAFAAGVCPSLGAEGHISGGGYGNMIRKFGLSVDNVVD AQIINAKGDLLDRKSMGEDLFWAIRGGGGASFGVIMAWKIKLVKVPERVTVFKVERNVEQGLTLLVVKYQEIAPKFESELFLRAFFSTEKVNGTEKGSNA TMTVKGKFMAQYLGEPDKLLTLIKTQFPELGILPTDCTPMRWVDTTLYWYRMPNDTKIDYLIQRASKYQSYLK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26420			FAD-binding Berberine family p...		Lus10023368 [exp]	0	1
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10001280 [exp]	2.0	1.0000
					Lus10010778 [exp]	3.9	1.0000
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004529 [exp]	5.3	1.0000
					Lus10022145 [exp]	5.9	1.0000
AT3G25050		XTH3	xyloglucan endotransglucosylas...		Lus10011845 [exp]	6.0	1.0000
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Lus10012855 [exp]	6.2	1.0000
					Lus10014487 [exp]	6.7	1.0000
AT1G67623			F-box family protein (.1)		Lus10022147 [exp]	6.9	1.0000
					Lus10011061 [exp]	8.2	1.0000
					Lus10011759 [exp]	8.4	1.0000

Compare expression of checked genes

Lus10023368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.