Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30710 155 / 6e-46 FAD-binding Berberine family protein (.1) AT1G34575 155 / 7e-46 FAD-binding Berberine family protein (.1) AT1G01980 138 / 2e-39 ATSEC1A FAD-binding Berberine family protein (.1) AT1G30730 138 / 2e-39 FAD-binding Berberine family protein (.1) AT4G20800 136 / 8e-39 FAD-binding Berberine family protein (.1) AT5G44400 134 / 9e-38 FAD-binding Berberine family protein (.1) AT1G30720 133 / 1e-37 FAD-binding Berberine family protein (.1) AT1G30700 132 / 3e-37 FAD-binding Berberine family protein (.1) AT5G44380 129 / 4e-36 FAD-binding Berberine family protein (.1) AT5G44410 129 / 5e-36 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023373 [exp] 268 / 5e-92 AT1G34575 283 / 2e-92 FAD-binding Berberine family protein (.1) Lus10035466 [exp] 162 / 1e-48 AT1G30700 585 / 0.0 FAD-binding Berberine family protein (.1) Lus10023375 [exp] 153 / 6e-45 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 150 / 7e-44 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10009009 [exp] 149 / 1e-43 AT1G30700 534 / 0.0 FAD-binding Berberine family protein (.1) Lus10023366 [exp] 137 / 6e-40 AT1G11770 490 / 2e-171 FAD-binding Berberine family protein (.1) Lus10038440 [exp] 137 / 4e-39 AT1G11770 403 / 4e-135 FAD-binding Berberine family protein (.1) Lus10001965 [exp] 131 / 9e-37 AT5G44390 454 / 2e-155 FAD-binding Berberine family protein (.1) Lus10023363 [exp] 130 / 9e-37 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G158400 [exp] 175 / 2e-53 AT1G34575 649 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G470100 [exp] 164 / 2e-49 AT1G30700 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459200 [exp] 154 / 2e-45 AT4G20800 606 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158300 [exp] 154 / 2e-45 AT1G30700 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162666 [exp] 151 / 2e-44 AT5G44440 506 / 6e-176 FAD-binding Berberine family protein (.1) Potri.001G462300 [exp] 145 / 2e-44 AT1G30700 316 / 6e-106 FAD-binding Berberine family protein (.1) Potri.011G162732 [exp] 150 / 5e-44 AT4G20820 534 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162884 [exp] 149 / 9e-44 AT4G20820 527 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G155900 [exp] 149 / 9e-44 AT4G20800 617 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162900 [exp] 149 / 1e-43 AT4G20820 526 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10023369 pacid=23181069 polypeptide=Lus10023369 locus=Lus10023369.g ID=Lus10023369.BGIv1.0 annot-version=v1.0 ATGGACGAGATCCCCGAGGATGCAACTCCGTTCCCGCACAGAAAGGGGAATCTTTTTAAAGTTCAGTACGCGGCGAACTGGAAGGAGGAAGGGAACGACT CGGTGGTGCTGCATTTGGAGCGGACGAGGGCGCTTTACGATGCAATGACTCCCTATGTTTCGAAGGATCCGAGGGAGGCGTTTCTTAACTATCGGGATAT CGAGCTTGGGAATATCGGTAGCAATGGGAATGGGACGTATGAGCAGGCGGCGGGGTATGGGTTGAAGTACTTCAAGAACAATTTCGAGAGGTTGGTGAAG GTGAAAGCTGAGGTTGATCCTGAGAATTTCTTTAGGTATGAGCAGAGCATTCCGGTTAGCAGTAACCCTAGGAAGAGTGAGTTGTAG
AA sequence Show only first row Show all	>Lus10023369 pacid=23181069 polypeptide=Lus10023369 locus=Lus10023369.g ID=Lus10023369.BGIv1.0 annot-version=v1.0 MDEIPEDATPFPHRKGNLFKVQYAANWKEEGNDSVVLHLERTRALYDAMTPYVSKDPREAFLNYRDIELGNIGSNGNGTYEQAAGYGLKYFKNNFERLVK VKAEVDPENFFRYEQSIPVSSNPRKSEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30710			FAD-binding Berberine family p...		Lus10023369 [exp]	0	1
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10026511 [exp]	1.0	0.9990
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10031033 [exp]	4.2	0.8552
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10034957 [exp]	5.2	0.8552
AT1G70780			unknown protein		Lus10039287 [exp]	6.0	0.8552
					Lus10027606 [exp]	7.1	0.8401
AT2G14440			Leucine-rich repeat protein ki...		Lus10005049 [exp]	7.7	0.8286
AT4G37840		HKL3	hexokinase-like 3 (.1)		Lus10011584 [exp]	7.9	0.7902
					Lus10006913 [exp]	8.4	0.6230
AT5G24130			unknown protein		Lus10001061 [exp]	9.5	0.7525
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10012859 [exp]	9.5	0.7717

Compare expression of checked genes

Lus10023369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.