Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023372 [exp] 527 / 0 AT3G16210 67 / 5e-12 F-box family protein (.1) Lus10013988 [exp] 244 / 2e-75 AT3G49180 471 / 4e-160 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10015408 [exp] 211 / 2e-65 AT3G16210 64 / 6e-11 F-box family protein (.1) Lus10024677 [exp] 145 / 1e-42 ND 42 / 2e-04 Lus10028961 [exp] 148 / 8e-42 AT4G12560 81 / 2e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10007485 [exp] 129 / 1e-35 ND / Lus10036360 [exp] 87 / 3e-20 AT4G04690 63 / 1e-11 F-box and associated interaction domains-containing protein (.1) Lus10001105 [exp] 61 / 1e-10 AT3G06240 109 / 3e-26 F-box family protein (.1) Lus10014793 [exp] 59 / 3e-10 AT3G06240 51 / 9e-08 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G137200 [exp] 41 / 0.0006 AT3G07870 94 / 1e-20 F-box and associated interaction domains-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023370 pacid=23180981 polypeptide=Lus10023370 locus=Lus10023370.g ID=Lus10023370.BGIv1.0 annot-version=v1.0 ATGGAATTCCAAGAAGCTGCCAAGGTTGATGATGATTATGATATGTATGATTACGATCCTGCTCAATTCTACCATGGTCCTACTCCCCTTATTTTTACAG AGATTTATAGCTTGAAGAACGATTCATGGAAGACGCTAAATGTGGATAGCCATTCGGCAGTGGGTAGACACATCTATGACAGATGGCCTTATGAAACTGA TAATCTCCATCAACATTGGGATACATCTCGAAACGAGAAATGCTATTGGTTTCGCCGTGAGGAAAGTCCGGGAGTTTGTTCTGTAATCTCGTTCGACATG AGTACCGAAGTATTTGAATTAGTCACCTGTCCCCGCCCCGCTGGCCTTACACATCACGACGAGGAAGCTGATGACAATGAGGACATTGATGTCAGCGACG ACCCGTGTATGATGAAATTAGTTCACAAGGATGTTTGGTATGTCAGATCATACTTCATGTTGAAGGGTGTGATCATGGTAAATTTCTCAAGTGGGTGTCT CAAGTGCAGTAATATTCCCGATGATGAGATATGGGTAATGTTGAAATATGGAGTTGCTGAATCCTGGACGAAATTGTTCGCTTGGCCGGAGCTGAAGTAC ACTCATCATCTGGATCTCTGGAAGGACAGTGCATATATTTGCGGAGAAAGCTCTAATATGTGCGTTCGTGATATTACAACCGGTGAAGTCATATATGAAC ATATCGAAATTGAAGGCACGATCCACTGTTTGCACGCTCGTATTTTTGCTCCGACTCAAGTCTCGATTTCTGGACTAGTCTCCAACAACTTGGAGTAG
AA sequence Show only first row Show all	>Lus10023370 pacid=23180981 polypeptide=Lus10023370 locus=Lus10023370.g ID=Lus10023370.BGIv1.0 annot-version=v1.0 MEFQEAAKVDDDYDMYDYDPAQFYHGPTPLIFTEIYSLKNDSWKTLNVDSHSAVGRHIYDRWPYETDNLHQHWDTSRNEKCYWFRREESPGVCSVISFDM STEVFELVTCPRPAGLTHHDEEADDNEDIDVSDDPCMMKLVHKDVWYVRSYFMLKGVIMVNFSSGCLKCSNIPDDEIWVMLKYGVAESWTKLFAWPELKY THHLDLWKDSAYICGESSNMCVRDITTGEVIYEHIEIEGTIHCLHARIFAPTQVSISGLVSNNLE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10023370 [exp]	0	1
AT3G16210			F-box family protein (.1)		Lus10023372 [exp]	1.0	0.9665
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10015570 [exp]	1.4	0.9491
AT1G47750		PEX11A	peroxin 11A (.1)		Lus10029260 [exp]	2.4	0.9169
AT2G15570		TRX-M3, GAT1, A...	THIOREDOXIN-M3, GFP ARRESTED T...		Lus10019847 [exp]	3.7	0.8830
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10010880 [exp]	4.0	0.8797
AT2G25270			unknown protein		Lus10038102 [exp]	4.5	0.9086
					Lus10019272 [exp]	5.2	0.8913
AT3G07870			F-box and associated interacti...		Lus10038606 [exp]	5.7	0.9112
AT4G22780		ACR7	ACT domain repeat 7 (.1)		Lus10006662 [exp]	5.7	0.8938
AT5G56460			Protein kinase superfamily pro...		Lus10013406 [exp]	6.7	0.8830

Compare expression of checked genes

Lus10023370 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.