Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06240 67 / 1e-11 F-box family protein (.1) AT3G16210 66 / 1e-11 F-box family protein (.1) AT3G23880 61 / 9e-10 F-box and associated interaction domains-containing protein (.1) AT4G12560 59 / 4e-09 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT5G42460 56 / 3e-08 F-box and associated interaction domains-containing protein (.1) AT3G17490 56 / 3e-08 F-box and associated interaction domains-containing protein (.1) AT3G16740 54 / 8e-08 F-box and associated interaction domains-containing protein (.1) AT3G22650 54 / 9e-08 ATSFL61, CEG CEGENDUO, S-LOCUS F-BOX 61, F-box and associated interaction domains-containing protein (.1) AT1G53550 54 / 1e-07 F-box family protein (.1) AT3G10430 50 / 2e-06 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023370 [exp] 526 / 0 ND 37 / 0.008 Lus10015408 [exp] 423 / 2e-145 AT3G16210 64 / 6e-11 F-box family protein (.1) Lus10013988 [exp] 324 / 5e-103 AT3G49180 471 / 4e-160 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10028961 [exp] 267 / 1e-84 AT4G12560 81 / 2e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10011203 [exp] 224 / 3e-70 ND 40 / 0.001 Lus10001105 [exp] 181 / 2e-52 AT3G06240 109 / 3e-26 F-box family protein (.1) Lus10036360 [exp] 159 / 7e-46 AT4G04690 63 / 1e-11 F-box and associated interaction domains-containing protein (.1) Lus10024677 [exp] 142 / 1e-39 ND 42 / 2e-04 Lus10007485 [exp] 127 / 2e-33 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G012200 [exp] 99 / 3e-22 AT4G12560 86 / 4e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.011G121200 [exp] 91 / 1e-19 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.012G099733 [exp] 84 / 1e-17 AT3G16210 92 / 2e-20 F-box family protein (.1) Potri.002G223000 [exp] 84 / 2e-17 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.017G058000 [exp] 82 / 5e-17 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.014G162600 [exp] 82 / 7e-17 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.001G318300 [exp] 81 / 1e-16 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.008G006900 [exp] 81 / 2e-16 AT4G12560 95 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.016G012700 [exp] 81 / 4e-16 AT4G12560 143 / 3e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G154500 [exp] 80 / 7e-16 AT4G12560 139 / 7e-37 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10023372 pacid=23181001 polypeptide=Lus10023372 locus=Lus10023372.g ID=Lus10023372.BGIv1.0 annot-version=v1.0 ATGTCCGGCGAAATCAGCAGCAGCAGGAGCAGCCCTTCTTATTACTTTTCGGAAGATATAGTGATTAACATTCTCCAGTGGCTTCCGATCATTTCATGTA TTGCTCGATTCCGCTGCGTCTGTCGATCGTGGCGGACCCTCCTATCCGATCCCAATGTCATCCGCAAAATCCTCTTCCATGACCACAAAGATGATCAGAA GAAATTCCAGGTCCTTGTATCCGGAACTCGAGACTTCGCGTATCATGATCCCGTACTTCACTATATCTACTCCTACGAAACTCTCCGCCCAATCGAAGAA TTGGTCACCCCCATCGGCAGTGAAATTTCAAGAGTGGTAGGTTGCTGCGATGGCATATTCTGTTTAGCACATACGGAGAGGGACGACAACGGAAACTACC ATCACATCACGGTTCTGTGGAATCCGGCTACATCCGAAACCAAAATCATTCCTCCGGGTCCTTATCACCCTTGTCACACTTCAGATTTCTTCCTGTGCCT TCGTTCAGAGCGCATCGGTTTTGGATACGATCCCAAAACCAATGACTACAAAATTGTCCGAGTGATGGAATTCCAAGAAGCTGCCAAGGTTGATGATGAT TATGATATGTATGATTACGATCCTGCTCAATTCTACCATGGTCCTACTCCCCTTATTTTTACAGAGATTTATAGCTTGAAGAACGATTCATGGAAGACGA TAAATGTGGATAGCCATTCGGCAGTGGGTAGACACATCTATGACAGATGGCCTTATGAAACTGATAATCTCCATCAACATTGGGATACATCTCGAAACGA GAAATGCTATTGGTTTCGCCGTGAGGAAAGTCCGGGAGTTTGTTCTGTAATCTCGTTCGACATGAGTACCGAAGTATTTGAATTAGTCACCTGTCCCCGC CCCGCTGGCCTTACACATCACGACGAGGAAGCTGATGACAATGAGGACATTGATGTCAGCGACGACCCGTGTATGATGAAATTAGTTCACAAGGATGTTT GGTATGTCAGATCATACTTCATGTTGAAGGGTGTGATCATGGTAAATTTCTCAAGTGGGTGTCTCAAGTGCAGTAATATTCCCGATGATGAGATATGGGT AATGTTGAAATATGGAGTTGTTGAATCCTGGACGAAATTGTTCGCTTGGCCGGAGCTGAAGTACACTCATCATCTGGATCTCTGGAAGGACAGTGCATAT ATTTGCGGAGAAAGCTCTAATATGTGCGTTCGTGATATTACAACCGGTGAAGTCATATATGAACATATCGAAATTGAAGGCACGATCCACTGTTTGCACG CTCGTATTTTTGCTCCGACTCAAGTCTCGATTTCTGGACTAGTCTCCAACAACTTGGAGTAG
AA sequence Show only first row Show all	>Lus10023372 pacid=23181001 polypeptide=Lus10023372 locus=Lus10023372.g ID=Lus10023372.BGIv1.0 annot-version=v1.0 MSGEISSSRSSPSYYFSEDIVINILQWLPIISCIARFRCVCRSWRTLLSDPNVIRKILFHDHKDDQKKFQVLVSGTRDFAYHDPVLHYIYSYETLRPIEE LVTPIGSEISRVVGCCDGIFCLAHTERDDNGNYHHITVLWNPATSETKIIPPGPYHPCHTSDFFLCLRSERIGFGYDPKTNDYKIVRVMEFQEAAKVDDD YDMYDYDPAQFYHGPTPLIFTEIYSLKNDSWKTINVDSHSAVGRHIYDRWPYETDNLHQHWDTSRNEKCYWFRREESPGVCSVISFDMSTEVFELVTCPR PAGLTHHDEEADDNEDIDVSDDPCMMKLVHKDVWYVRSYFMLKGVIMVNFSSGCLKCSNIPDDEIWVMLKYGVVESWTKLFAWPELKYTHHLDLWKDSAY ICGESSNMCVRDITTGEVIYEHIEIEGTIHCLHARIFAPTQVSISGLVSNNLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16210			F-box family protein (.1)		Lus10023372 [exp]	0	1
					Lus10023370 [exp]	1.0	0.9665
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10015570 [exp]	3.5	0.9180
AT2G25270			unknown protein		Lus10038102 [exp]	6.3	0.8959
AT1G05810		ARA, Ara-1, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10025876 [exp]	6.7	0.9140
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10023212 [exp]	6.9	0.8801
					Lus10019272 [exp]	9.8	0.8723
AT4G22780		ACR7	ACT domain repeat 7 (.1)		Lus10006662 [exp]	13.0	0.8676
AT1G59710			Protein of unknown function (D...		Lus10036694 [exp]	13.8	0.8768
AT1G33800			Protein of unknown function (D...		Lus10034373 [exp]	15.6	0.9034
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10010880 [exp]	16.1	0.8545

Compare expression of checked genes

Lus10023372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.