Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34575 283 / 2e-92 FAD-binding Berberine family protein (.1) AT1G30710 273 / 3e-88 FAD-binding Berberine family protein (.1) AT4G20800 265 / 3e-85 FAD-binding Berberine family protein (.1) AT1G30720 263 / 2e-84 FAD-binding Berberine family protein (.1) AT1G30700 263 / 2e-84 FAD-binding Berberine family protein (.1) AT1G01980 259 / 5e-83 ATSEC1A FAD-binding Berberine family protein (.1) AT1G30730 256 / 8e-82 FAD-binding Berberine family protein (.1) AT1G26390 254 / 6e-81 FAD-binding Berberine family protein (.1) AT1G26420 253 / 1e-80 FAD-binding Berberine family protein (.1) AT1G26380 251 / 8e-80 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038439 [exp] 285 / 6e-93 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10023369 [exp] 268 / 1e-91 AT1G30710 156 / 4e-46 FAD-binding Berberine family protein (.1) Lus10009009 [exp] 275 / 5e-89 AT1G30700 534 / 0.0 FAD-binding Berberine family protein (.1) Lus10035466 [exp] 275 / 5e-89 AT1G30700 585 / 0.0 FAD-binding Berberine family protein (.1) Lus10023366 [exp] 263 / 8e-86 AT1G11770 490 / 2e-171 FAD-binding Berberine family protein (.1) Lus10038440 [exp] 266 / 1e-85 AT1G11770 403 / 4e-135 FAD-binding Berberine family protein (.1) Lus10023368 [exp] 253 / 8e-84 AT1G26420 205 / 2e-62 FAD-binding Berberine family protein (.1) Lus10023375 [exp] 261 / 1e-83 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10038445 [exp] 239 / 1e-75 AT1G30760 415 / 6e-141 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G158400 [exp] 331 / 8e-111 AT1G34575 649 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G470100 [exp] 301 / 2e-99 AT1G30700 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459200 [exp] 300 / 4e-99 AT4G20800 606 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G156000 [exp] 299 / 2e-98 AT4G20800 597 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G155900 [exp] 291 / 2e-95 AT4G20800 617 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158300 [exp] 287 / 5e-94 AT1G30700 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459100 [exp] 285 / 4e-93 AT4G20800 623 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459500 [exp] 279 / 1e-90 AT4G20800 559 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462200 [exp] 278 / 2e-90 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462600 [exp] 277 / 7e-90 AT1G01980 658 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10023373 pacid=23181021 polypeptide=Lus10023373 locus=Lus10023373.g ID=Lus10023373.BGIv1.0 annot-version=v1.0 ATGCAGGTGACTGTATTCAAGGTGGAGAGAAATGTGGAACAAGGACTGACACCATTGGTCGTGAAATATCAAGAAATCGCTCCTAAATTCGAGTCTGAGC TCTTCCTCAGAGCCCTTTTCTCCACGGAGAAGGTAAATGGCATTGAGAAAGGGTCCAACGCTACGATGACGGTCAAAGGGAAATTCATGGCACAGTACCT TGGCGAGCCAGACAAGCTCCTAACCCTAATCAAGACACAATTCCCAGAACTCGGGATACTGCCTACCGACTGTACCCCAATGAGATGGGTCGACACGACC CTGTACTGGTACAGAATGCCTAACGACACCAAGATCGACTACCTCATCCAGAGGGCGTCCAAGTACCAATCGTACTTGAAACGAAAGTCCGACTATATCA AATCCCCCATCCCCAAGGAAGGGCTAGACTTGGTTTGGAAGAAGATGATCGAGATCGCGGACGTGGGGATGACGTGGAACCCTTATGGAGGCATAATGGA CGAGATCCCCGAGGATGCAACTCCGTTCCCGCACAGAAAGGGGAATCTTTTTAAAGTTCAGTACGCGGCGAACTGGAAGGAGGAAGGGAACGACTCGGTG GTGCTGCATTTGGAGCGGACGAGGGCGCTTTACGATGCAATGACTCCCTATGTTTCGAAGGATCCGAGGGAGGCGTTTCTTAACTATCGGGATATCGAGC TTGGGAATATCGGTAGCAATGGGAATGGGACGTATGAGCAGGCGGCGGGGTATGGGTTGAAGTACTTCAAGAACAATTTCGAGAGGTTGGTGAAGGTGAA AGCTGAGGTTGATCCTGAGAATTTCTTTAGGTATGAGCAGAGCATTCCGGTTAGCAGTAACCCTAGGAAGAGTGAGTTGTAG
AA sequence Show only first row Show all	>Lus10023373 pacid=23181021 polypeptide=Lus10023373 locus=Lus10023373.g ID=Lus10023373.BGIv1.0 annot-version=v1.0 MQVTVFKVERNVEQGLTPLVVKYQEIAPKFESELFLRALFSTEKVNGIEKGSNATMTVKGKFMAQYLGEPDKLLTLIKTQFPELGILPTDCTPMRWVDTT LYWYRMPNDTKIDYLIQRASKYQSYLKRKSDYIKSPIPKEGLDLVWKKMIEIADVGMTWNPYGGIMDEIPEDATPFPHRKGNLFKVQYAANWKEEGNDSV VLHLERTRALYDAMTPYVSKDPREAFLNYRDIELGNIGSNGNGTYEQAAGYGLKYFKNNFERLVKVKAEVDPENFFRYEQSIPVSSNPRKSEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34575			FAD-binding Berberine family p...		Lus10023373 [exp]	0	1
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000558 [exp]	2.8	1.0000
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10004067 [exp]	4.0	1.0000
AT1G17930			Aminotransferase-like, plant m...		Lus10005482 [exp]	4.9	1.0000
					Lus10011636 [exp]	5.7	1.0000
AT3G16970			Plant self-incompatibility pro...		Lus10011753 [exp]	6.3	1.0000
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10011892 [exp]	6.9	1.0000
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10022473 [exp]	7.5	1.0000
AT4G10950			SGNH hydrolase-type esterase s...		Lus10023070 [exp]	8.0	1.0000
AT5G37660		PDLP7	plasmodesmata-located protein ...		Lus10015952 [exp]	8.9	1.0000
AT2G02340		ATPP2-B8	phloem protein 2-B8 (.1)		Lus10025662 [exp]	9.0	1.0000

Compare expression of checked genes

Lus10023373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.