Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20800 492 / 1e-170 FAD-binding Berberine family protein (.1) AT1G26380 487 / 1e-168 FAD-binding Berberine family protein (.1) AT1G26420 476 / 2e-164 FAD-binding Berberine family protein (.1) AT1G26390 470 / 5e-162 FAD-binding Berberine family protein (.1) AT1G26410 461 / 5e-158 FAD-binding Berberine family protein (.1) AT1G34575 446 / 9e-153 FAD-binding Berberine family protein (.1) AT1G26400 445 / 2e-152 FAD-binding Berberine family protein (.1) AT1G30720 430 / 3e-146 FAD-binding Berberine family protein (.1) AT1G30710 430 / 3e-146 FAD-binding Berberine family protein (.1) AT1G30700 429 / 3e-146 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038437 [exp] 820 / 0 AT1G26380 484 / 2e-167 FAD-binding Berberine family protein (.1) Lus10021289 [exp] 744 / 0 AT1G26380 486 / 4e-168 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 449 / 6e-154 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10035466 [exp] 435 / 2e-148 AT1G30700 585 / 0.0 FAD-binding Berberine family protein (.1) Lus10009009 [exp] 431 / 1e-146 AT1G30700 534 / 0.0 FAD-binding Berberine family protein (.1) Lus10023363 [exp] 429 / 2e-146 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10023375 [exp] 427 / 3e-145 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 407 / 3e-137 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10018119 [exp] 400 / 9e-135 AT2G34790 641 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G459100 [exp] 569 / 0 AT4G20800 623 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G155900 [exp] 563 / 0 AT4G20800 617 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459500 [exp] 545 / 0 AT4G20800 559 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459200 [exp] 533 / 0 AT4G20800 606 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G156000 [exp] 527 / 0 AT4G20800 597 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158400 [exp] 506 / 5e-176 AT1G34575 649 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158300 [exp] 473 / 2e-163 AT1G30700 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G470100 [exp] 473 / 2e-163 AT1G30700 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462200 [exp] 460 / 3e-158 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158500 [exp] 457 / 8e-157 AT1G01980 671 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10023374 pacid=23181055 polypeptide=Lus10023374 locus=Lus10023374.g ID=Lus10023374.BGIv1.0 annot-version=v1.0 ATGTTAATACCACTCGAGTCCTTCCAGCAATGCCTGAAGCAACGCAACGATGGATCCGACGCCGTTTTATACCTCCCAGCCAACTCGTCTTTCGCCACCG TTCTAAATGCCTACATACGTAACCGCAGATTCATGGGGCCCACCACTGATAAACCATTAGCCATCGTTACCGCCACGTGCGAGTCGCACGTGCAAGCCAC GGTCATTTGTTCCAAGCTCAACAGACTGCAGTTGAGGACTCGTAGCGGGGGTCACGACTACGAAGGCCTTTCTTACCGGTCGCCTTCACCGTTTGTCCTC CTTGACATGAACAATCTCCGGTCAATCGACATTGACCTTGCATCCGAGACCGCTTGGGTTGAGTCTGGAGCTACTTTGGGTGAGCTTTACTATTCAATAG CCAACAAGAGCAAAACCCACGCCTTCCCTGCTGGGGTTTGCCCCACCATCGGCGTTGGCGGTCACTTCGTTGGTGGCGGGTACGGAAATTTGTTAAGGAA GTATGGTCTCTCCGTCGATAATGTCCTCGATGCGCGTGTGGTGGACGCCTACGGGAATATCCTTACTAGATCAACGATGGGTGATTTGTTCTGGGCAATT CGAGGCGGCGGCGGAGCCAGCTTCGGAATCATCCTTTCGTGGAAGATTAAGCTTGTCAGGGTTCCTGAAATCATCACCACTTTCAACGTAAAGCGAAAAT TGGAGGAAGGAGCGACGGACATCTTTTACAGATGGCAACAGGTGTCGACCAATCTGAGCACAAACCTTTTTATAAGAGCTATGCCGCTGGTTATGTCTGC CGGCGGGGAGGGAGGGGAGAAAGAGGTTCAGATCTTGTTCGTCGGAGAGTATTTGGGACGACTGAAAGAACTTCTTCCCTTGATGGACAAAAGCTTTCCC GAATTAGGTTTCAAGGCGGCAGACGGTGTAGAAGGGAGCTGGGTCGAGTCCGTCCTGTCGTGGGCCATGCTTCCGACAAGCCCATTAGAGTTGTTGCTAA ATAGAAAATTTGAACCCAGTAATTTCAAGAGCAAATCCGATTACGTGACGAAGGTGATCCCCAAGAAAGCGTTGCCAGAGATATGGGACGCAATTCTAAA AACTGGAGGGGCGTTCACACAATGGAATCCTTACGGCGGGAGGATGGCAACAATTCCGGCGAACGAGACAGCATACAGTCACAGAGCTGGGTATCTGTTC AAAGTACAGTATTATCTGGGCTGGAATGAAGATGGAGAAGAAGCAGAGGCGGAACACGTTGCTGCACTGGCCGCATTACATGACGCCATGACCCCGTACG TAACCAAAAAGCCAAGAGAGGCATTTTTGAATTACAGGGATCTTGCTAATGGGGAGAACTCCGTTGATAAGCCTGACTGGGAGACGGCCAAAGTGTACGG AGAGAAGTATTTCAAAGGTCATTTTGAGAGGCTATCAAAAATTAAGCGTCAATTTGACCCCGAAAATTTCTTTAGGGACCAGCAGAGTATTCCTCCTTTC CAGAACAGAGAACCACTGGCTTAA
AA sequence Show only first row Show all	>Lus10023374 pacid=23181055 polypeptide=Lus10023374 locus=Lus10023374.g ID=Lus10023374.BGIv1.0 annot-version=v1.0 MLIPLESFQQCLKQRNDGSDAVLYLPANSSFATVLNAYIRNRRFMGPTTDKPLAIVTATCESHVQATVICSKLNRLQLRTRSGGHDYEGLSYRSPSPFVL LDMNNLRSIDIDLASETAWVESGATLGELYYSIANKSKTHAFPAGVCPTIGVGGHFVGGGYGNLLRKYGLSVDNVLDARVVDAYGNILTRSTMGDLFWAI RGGGGASFGIILSWKIKLVRVPEIITTFNVKRKLEEGATDIFYRWQQVSTNLSTNLFIRAMPLVMSAGGEGGEKEVQILFVGEYLGRLKELLPLMDKSFP ELGFKAADGVEGSWVESVLSWAMLPTSPLELLLNRKFEPSNFKSKSDYVTKVIPKKALPEIWDAILKTGGAFTQWNPYGGRMATIPANETAYSHRAGYLF KVQYYLGWNEDGEEAEAEHVAALAALHDAMTPYVTKKPREAFLNYRDLANGENSVDKPDWETAKVYGEKYFKGHFERLSKIKRQFDPENFFRDQQSIPPF QNREPLA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26380			FAD-binding Berberine family p...		Lus10023374 [exp]	0	1
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10020834 [exp]	3.0	0.7297
					Lus10005512 [exp]	4.9	0.7014
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10016392 [exp]	8.7	0.7543
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10013118 [exp]	22.1	0.7359
AT5G04550			Protein of unknown function (D...		Lus10002840 [exp]	25.3	0.6296
AT4G29035			Plant self-incompatibility pro...		Lus10011895 [exp]	31.1	0.6643
AT5G25940			early nodulin-related (.1)		Lus10033027 [exp]	32.0	0.6572
AT3G58060			Cation efflux family protein (...		Lus10029300 [exp]	38.4	0.6541
AT1G76810			eukaryotic translation initiat...		Lus10023474 [exp]	40.8	0.6566
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10012953 [exp]	41.1	0.6750

Compare expression of checked genes

Lus10023374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.