Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30700 564 / 0 FAD-binding Berberine family protein (.1) AT1G30710 481 / 4e-166 FAD-binding Berberine family protein (.1) AT4G20840 475 / 2e-163 FAD-binding Berberine family protein (.1) AT1G11770 471 / 1e-161 FAD-binding Berberine family protein (.1) AT1G34575 463 / 7e-159 FAD-binding Berberine family protein (.1) AT1G26380 463 / 9e-159 FAD-binding Berberine family protein (.1) AT1G30720 456 / 3e-156 FAD-binding Berberine family protein (.1) AT4G20830 454 / 3e-155 FAD-binding Berberine family protein (.1.2) AT1G01980 452 / 3e-154 ATSEC1A FAD-binding Berberine family protein (.1) AT1G26420 450 / 8e-154 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035466 [exp] 569 / 0 AT1G30700 585 / 0.0 FAD-binding Berberine family protein (.1) Lus10009009 [exp] 512 / 6e-178 AT1G30700 534 / 0.0 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 472 / 3e-162 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 448 / 7e-153 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10023365 [exp] 446 / 4e-152 AT1G11770 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 432 / 2e-146 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10023361 [exp] 431 / 1e-145 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10023363 [exp] 428 / 1e-145 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038436 [exp] 424 / 2e-143 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G158300 [exp] 612 / 0 AT1G30700 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462200 [exp] 595 / 0 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462400 [exp] 574 / 0 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G470100 [exp] 535 / 0 AT1G30700 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158400 [exp] 524 / 0 AT1G34575 649 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G155900 [exp] 523 / 0 AT4G20800 617 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158500 [exp] 515 / 3e-179 AT1G01980 671 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459100 [exp] 515 / 3e-179 AT4G20800 623 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459500 [exp] 514 / 8e-179 AT4G20800 559 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459200 [exp] 507 / 4e-176 AT4G20800 606 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10023375 pacid=23181084 polypeptide=Lus10023375 locus=Lus10023375.g ID=Lus10023375.BGIv1.0 annot-version=v1.0 ATGTCTTTCACGACGATCTCCTTCATCCTATCCATCACACTGTTATCCATCACTCCGACGTCGTTATGCCACACTTCATCGGAATCCAATTTCATGCAAT GCCTCCACAACAACTCCAACCCTTCTAACCCAATCTCCCAAGCCATCTACACACCAAACGACACCGCTTCATACTCATCTGTCCTTCAAGCTTACATCCA AAACCAACGCTTCAACTTCATCAACACCACCAATTCCACGTCGTCAACAAAGCCGTTCCTCATCCTCACCGCGCTCGACGTGTCCCACGTCCAAACCGCC GTCGTTTGCGCCAGCAAACACAACGTCCAAATGAAGATCCGTAGCGGCGGCCACGACTACGAAGCTCTGTCCTACGTGTCACTAACTCAACAACCCTTCT TCATCCTCGACATGTTCAGCCTCCGAGATGTCGACGTGGACATTCCGTCGGAGACTGCATGGATCCAGACGGGAGCCATTCTTGGCGAAGTCTACTACAG AATCGCCGAGAAGAGCAAAGTCCACGGCTTCCCCGCCGGGGTGTGTCCTACGGTGGGGGTTGGTGGACACGTAAGCGGAGCAGGTTATGGTAACATGTTG AGGAAGCACGGGCTTACTGTCGACAACGTCGTTGACGCAGCGTTAGTCGACGTTAACGGTAGGTTGCTAGACAGAAAGTCAATGGGTGAGGATCTGTTCT GGGCGATTCGAGGCGGCGGTGGGGCCAGCTTCGGAGTCGTGATCTCGTACAAAGTCAACTTGGTTCGAGTCCCCGAACTCGTTACCGCGTTCAGCGTTTT CAAAACCGTTGACGAAGAAAATGGTATTGACATAGTTGACAAGTGGCAGCACGTGGCCGACAAGCTGGACGAACGTCTATTCATTAGATTGGTCTTGAAT GTGGTGAATGCTACGAAAGTCAGAGCTCGTTTCCTGGGCTTTTTTCTCGGGGATTCGGCCCAGTTAATGTCCATTATGAAGGAAAAGTTTCCAGAACTGG GCCTGGCCCAATCTGACTGTATCGAGACGAGTTGGATCAGGTCTGTTTTATTCTGGACGGATCTTCCCGTGGAAACCCGACCCGAAGTTTTACTTCGCCG GACGACGACGACGACCCGACTGAAGAGGAAGTCGGACTATGTCCAGAGGGTTATCCCGAGAGAGGGATTGGAGAGGCTGATGAAGAAGATGGTGGAGCTC CAAGTGGTGGGGATGGTGTTCAATCCATACGGAGGGAGGATGTCCGAAATTGCGGCGGATGCGACGCCGTTTCCGCACAGGGCGGGGAATCTGTGGAAGA TTCAGTACCAGGCAAACTGGAACTTGGCAGGGGAGGAAACAGAGGAGAGGAATCTTGAGATGGTGAGGAGGATGTACGAGTTCATGACGCCGTTCGTGTC GAAGAAGCCAAGAGGGGCGTTCCTGAATTACAGGGATATTGATTTGGGTGTGAATCATAATAACGGAGCAGGGAGCTATGATGAAGCGAGGAGTGGCTAT GGCGTGCAGTATTTTAGGGGGAATTTCAAGAGGTTGGTGGAGATCAAGAGTAAGGTTGATCCTGGGAATTTCTTCAGAAATGAACAGAGTATTCCTGTTG CTCCATCGTATTGA
AA sequence Show only first row Show all	>Lus10023375 pacid=23181084 polypeptide=Lus10023375 locus=Lus10023375.g ID=Lus10023375.BGIv1.0 annot-version=v1.0 MSFTTISFILSITLLSITPTSLCHTSSESNFMQCLHNNSNPSNPISQAIYTPNDTASYSSVLQAYIQNQRFNFINTTNSTSSTKPFLILTALDVSHVQTA VVCASKHNVQMKIRSGGHDYEALSYVSLTQQPFFILDMFSLRDVDVDIPSETAWIQTGAILGEVYYRIAEKSKVHGFPAGVCPTVGVGGHVSGAGYGNML RKHGLTVDNVVDAALVDVNGRLLDRKSMGEDLFWAIRGGGGASFGVVISYKVNLVRVPELVTAFSVFKTVDEENGIDIVDKWQHVADKLDERLFIRLVLN VVNATKVRARFLGFFLGDSAQLMSIMKEKFPELGLAQSDCIETSWIRSVLFWTDLPVETRPEVLLRRTTTTTRLKRKSDYVQRVIPREGLERLMKKMVEL QVVGMVFNPYGGRMSEIAADATPFPHRAGNLWKIQYQANWNLAGEETEERNLEMVRRMYEFMTPFVSKKPRGAFLNYRDIDLGVNHNNGAGSYDEARSGY GVQYFRGNFKRLVEIKSKVDPGNFFRNEQSIPVAPSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30700			FAD-binding Berberine family p...		Lus10023375 [exp]	0	1
AT1G30755			Protein of unknown function (D...		Lus10013554 [exp]	3.9	0.9362
AT4G34150			Calcium-dependent lipid-bindin...		Lus10014088 [exp]	11.4	0.9295
AT1G65690			Late embryogenesis abundant (L...		Lus10007364 [exp]	11.6	0.9390
AT5G10530			Concanavalin A-like lectin pro...		Lus10020456 [exp]	12.0	0.9521
AT5G10530			Concanavalin A-like lectin pro...		Lus10007079 [exp]	17.4	0.9381
AT1G11300			protein serine/threonine kinas...		Lus10023391 [exp]	21.4	0.9430
AT1G56240		ATPP2-B13	phloem protein 2-B13 (.1)		Lus10031471 [exp]	23.5	0.9125
AT1G11050			Protein kinase superfamily pro...		Lus10018855 [exp]	25.7	0.9353
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10013589 [exp]	26.9	0.9166
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10018631 [exp]	27.0	0.9080

Compare expression of checked genes

Lus10023375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.