Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20820 231 / 3e-72 FAD-binding Berberine family protein (.1) AT5G44360 222 / 1e-68 FAD-binding Berberine family protein (.1) AT5G44440 218 / 4e-67 FAD-binding Berberine family protein (.1) AT1G30760 216 / 4e-66 FAD-binding Berberine family protein (.1) AT4G20860 212 / 8e-65 FAD-binding Berberine family protein (.1) AT1G34575 209 / 1e-63 FAD-binding Berberine family protein (.1) AT5G44410 206 / 2e-62 FAD-binding Berberine family protein (.1) AT5G44380 203 / 3e-61 FAD-binding Berberine family protein (.1) AT1G30710 199 / 1e-59 FAD-binding Berberine family protein (.1) AT5G44400 199 / 1e-59 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038436 [exp] 471 / 8e-166 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10001965 [exp] 274 / 1e-88 AT5G44390 454 / 2e-155 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 270 / 3e-87 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10039682 [exp] 265 / 8e-85 AT5G44440 481 / 9e-166 FAD-binding Berberine family protein (.1) Lus10026775 [exp] 263 / 3e-84 AT5G44390 448 / 5e-153 FAD-binding Berberine family protein (.1) Lus10008410 [exp] 261 / 5e-84 AT5G44390 436 / 8e-149 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 234 / 4e-73 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10023375 [exp] 219 / 3e-67 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10023361 [exp] 219 / 3e-67 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G162900 [exp] 286 / 3e-93 AT4G20820 526 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162884 [exp] 285 / 4e-93 AT4G20820 527 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162968 [exp] 283 / 3e-92 AT4G20820 525 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G440700 [exp] 283 / 5e-92 AT4G20820 552 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162732 [exp] 282 / 7e-92 AT4G20820 534 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162828 [exp] 280 / 5e-91 AT5G44440 521 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G163000 [exp] 266 / 2e-85 AT4G20820 532 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162916 [exp] 266 / 2e-85 AT4G20820 532 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462000 [exp] 265 / 3e-85 AT5G44440 520 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462100 [exp] 264 / 9e-85 AT4G20820 521 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10023376 pacid=23180972 polypeptide=Lus10023376 locus=Lus10023376.g ID=Lus10023376.BGIv1.0 annot-version=v1.0 ATGGGTGAGGATTTGTTTTGGGTCATCCGCGGAGGGGGAGGAAACACATTCGGAATCGTAGTAGCTTGGAAACTGAGCTTGGTTACGGTTCCTCCCACGG GTACTCTATTTTCTATCAAGAGAAATCAAAACCCGACCAAGTTGTTCGACCGCTGGCAATACGTGGGTGACAAGTTTTCCGGCGATCTAATCATCATGCA TAAGCCGATTGAACAACTCCATCCTAATAACATTCGTTTCATTGTTCCTACGAAAAGCCAACACTCTGCTTTCCCAGATGGAACAGAGCTTCCCAGAACT CGGGATCTCAGAAACCGTTTCCAGCTCGACACGCCATTGGAGGTACTTCTCGACCGAAACATCACAATTTCAAAAATAGGACGGTTCAAGGCGAAATCAG ATTACGTGCAGACACCGATCCCCGAACCAGATCTTGAAAAGATATTCCTGAAGCTCTATGAAGTCGAGGACGACGCGATTCCGTTGGAGATAATGCCACA CGGAGGGAGAATGAGAGAGATCGGGGAGTCGAGTATTCCGTATCCGCACAGAGCTGGGAACATATACAAGATTCAGTACTATATGTACTGGTACGAAGCA GGGGAGGAAGCTGCGGAGAGAAACATTGGGTGGGTGAGGAAGTTCTACGAGTTCATGGAGCCTTATGTTTCGAAGAACCCGCGATCTGCGTACGTGAATT CAAGAGATCTTGGTCTGGGGGTGAATGGAAATGGGTACGAGAAGGCGAGGAAGTGGGGGGTGAAGTATTTCAAGAGTAATTTTGTTAAGTTGGTGAGGGT GAAGACTGCGGTGGATCCTGAAGATTTCTTCAGGAATGAGCAGAGTATTCCGCCATTTCCAAATCGTATGGAGGTTGTTGATCAGTGA
AA sequence Show only first row Show all	>Lus10023376 pacid=23180972 polypeptide=Lus10023376 locus=Lus10023376.g ID=Lus10023376.BGIv1.0 annot-version=v1.0 MGEDLFWVIRGGGGNTFGIVVAWKLSLVTVPPTGTLFSIKRNQNPTKLFDRWQYVGDKFSGDLIIMHKPIEQLHPNNIRFIVPTKSQHSAFPDGTELPRT RDLRNRFQLDTPLEVLLDRNITISKIGRFKAKSDYVQTPIPEPDLEKIFLKLYEVEDDAIPLEIMPHGGRMREIGESSIPYPHRAGNIYKIQYYMYWYEA GEEAAERNIGWVRKFYEFMEPYVSKNPRSAYVNSRDLGLGVNGNGYEKARKWGVKYFKSNFVKLVRVKTAVDPEDFFRNEQSIPPFPNRMEVVDQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20820			FAD-binding Berberine family p...		Lus10023376 [exp]	0	1
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10024050 [exp]	4.8	0.9627
					Lus10007991 [exp]	6.6	0.8055
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10014637 [exp]	7.2	0.9554
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10036306 [exp]	8.3	0.6593
					Lus10033534 [exp]	8.8	0.9554
AT2G06090			Plant self-incompatibility pro...		Lus10029389 [exp]	9.0	0.8798
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10025149 [exp]	9.2	0.8798
					Lus10039990 [exp]	10.2	0.9554
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10038876 [exp]	11.4	0.9554
AT4G16566		HINT4	histidine triad nucleotide-bin...		Lus10007467 [exp]	11.5	0.7987

Compare expression of checked genes

Lus10023376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.