Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30690 208 / 1e-62 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G72160 164 / 1e-46 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G09160 159 / 1e-43 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT3G51670 150 / 5e-42 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G22530 141 / 4e-37 PATL2 PATELLIN 2 (.1) AT1G72150 117 / 5e-29 PATL1 PATELLIN 1 (.1) AT3G24840 54 / 6e-08 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G21540 52 / 3e-07 ATSFH3 SEC14-like 3 (.1.2.3) AT4G39180 52 / 3e-07 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G08690 50 / 7e-07 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038435 [exp] 443 / 3e-154 AT1G30690 513 / 2e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10031752 [exp] 206 / 7e-61 AT1G30690 412 / 4e-137 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10001542 [exp] 172 / 4e-49 AT1G72160 450 / 8e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10031176 [exp] 164 / 5e-47 AT1G30690 130 / 5e-33 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10012219 [exp] 155 / 2e-44 AT3G51670 564 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10001269 [exp] 157 / 4e-44 AT3G51670 602 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10003552 [exp] 152 / 4e-42 AT1G30690 290 / 4e-92 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10000102 [exp] 149 / 6e-42 AT4G09160 182 / 3e-53 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10033895 [exp] 152 / 4e-41 AT1G30690 218 / 1e-62 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G461400 [exp] 231 / 1e-71 AT1G30690 497 / 4e-172 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.013G105900 [exp] 194 / 5e-57 AT1G72160 574 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079300 [exp] 187 / 2e-54 AT1G72160 545 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011101 [exp] 177 / 9e-51 AT1G72160 452 / 4e-154 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011100 [exp] 177 / 1e-50 AT1G72160 454 / 6e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.004G138200 [exp] 174 / 1e-49 AT1G72160 457 / 2e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.005G224800 [exp] 170 / 5e-49 AT1G30690 333 / 4e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.013G106000 [exp] 172 / 1e-48 AT1G72160 457 / 6e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.016G127700 [exp] 161 / 5e-46 AT3G51670 641 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.019G079500 [exp] 164 / 2e-45 AT1G72160 439 / 1e-148 Sec14p-like phosphatidylinositol transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10023378 pacid=23180948 polypeptide=Lus10023378 locus=Lus10023378.g ID=Lus10023378.BGIv1.0 annot-version=v1.0 ATGACCGCCGAGGTAATTAACGCCGCAGCTCAAAAGGCAGAGGAGGTTCTCGCCGTCGACGAGACGGTGAAGGCCACGGCGGTGGTTGAGGTCTCCTCCA AGCCTGCCAAGGCCGCGGAGAAGATATCTTCCTTCAGGGAGGAAACAAACATCTTGTCAGATCTCAAGGAATTCGAGAAGAAGGCTCTCACCAGCTTCAA ATCCAAGCTCGAGGACGCAATCCTCAACAACACTCTGTCCCTCCAATCCCAGAAGCCTAAGAATGAAGAAAACAAGAAGGAGGTCCAGCAATCTGTAGAA ATTGCAGCAGCCAAAGAAGAAGTAGTAAAAGACGAACAAGCTTCTGCTGCTGCGGAGGGGGAGGACCAAAATCCGCAAGCAGAAGAATCGGCAGCTGCTG TTGTAGATGAGAAGGAAAAAATTATCGAAGAATGCGAAAAGAAAGATGAAAAGGTCGAGGAGGAAGCTGATGATCAGAATGTCGACAGCGAGATCTCCCT GTGGGGAGTCCAATTGCTGCCGAGCAAAGGAGGGGAGGCGACCGACGTCGTACTGCTGAAATTCCTCCGAGCGAGAGACTTCAAGGTCAACGAAGCGTTC GAGATGTTGAGGAAGACTCTGCAATGGAGGAAGGAGAACAAAATCGATTCCATTCTGGAAGAAGATCTAGGACAGGATCATCTCGCGGTGGCGTTCTACA CCAACGGTGTAGATCGAGTGGGGCACCCTGTTTCTTACAATATATACGGAGTTTTCAACAGTGAAGAGGTTTACTCCAAGGCATTTGGAACTGGCGAGGA GGAGAATAGCAAGCAGTTTCTGAGATGGAGGATTCAGCAGCTGGAGCAGAGTATTCAGAAGCTTGAGTTGAAGTCTGGTGGCGTTGCTTCTCTGCTTCAG ATCAGTGACCTTAAGAATTCCCCTCCGCCGCTGTTGAGTGATTTTGTTTTTGATTTGATTTTCTGCAGATATTCATCAACGTGCCGTTCTGGTACTACGC AATGA
AA sequence Show only first row Show all	>Lus10023378 pacid=23180948 polypeptide=Lus10023378 locus=Lus10023378.g ID=Lus10023378.BGIv1.0 annot-version=v1.0 MTAEVINAAAQKAEEVLAVDETVKATAVVEVSSKPAKAAEKISSFREETNILSDLKEFEKKALTSFKSKLEDAILNNTLSLQSQKPKNEENKKEVQQSVE IAAAKEEVVKDEQASAAAEGEDQNPQAEESAAAVVDEKEKIIEECEKKDEKVEEEADDQNVDSEISLWGVQLLPSKGGEATDVVLLKFLRARDFKVNEAF EMLRKTLQWRKENKIDSILEEDLGQDHLAVAFYTNGVDRVGHPVSYNIYGVFNSEEVYSKAFGTGEEENSKQFLRWRIQQLEQSIQKLELKSGGVASLLQ ISDLKNSPPPLLSDFVFDLIFCRYSSTCRSGTTQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10023378 [exp]	0	1
AT5G56890			Protein kinase superfamily pro...		Lus10027635 [exp]	2.0	0.8593
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Lus10025461 [exp]	2.2	0.8954
AT1G71270		ATVPS52, TTD8, ...	T-DNA TRANSMISSION DEFECT 8, P...		Lus10016549 [exp]	2.4	0.8527
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10009247 [exp]	4.9	0.8568
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Lus10037457 [exp]	5.3	0.8459
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10035126 [exp]	8.8	0.7740
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Lus10020120 [exp]	8.9	0.8533
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10038278 [exp]	11.5	0.8238
AT5G66920		SKS17	SKU5 similar 17 (.1)		Lus10016770 [exp]	12.4	0.8258
AT1G47380			Protein phosphatase 2C family ...		Lus10042659 [exp]	12.6	0.7852

Compare expression of checked genes

Lus10023378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.