Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30680 828 / 0 toprim domain-containing protein (.1) AT1G30660 325 / 5e-106 nucleic acid binding;nucleic acid binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038434 [exp] 1325 / 0 AT1G30680 852 / 0.0 toprim domain-containing protein (.1) Lus10038433 [exp] 294 / 4e-94 AT1G30680 297 / 5e-100 toprim domain-containing protein (.1) Lus10023380 [exp] 293 / 9e-93 AT1G30680 294 / 1e-97 toprim domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G461300 [exp] 964 / 0 AT1G30680 828 / 0.0 toprim domain-containing protein (.1) Potri.001G461200 [exp] 310 / 2e-99 AT1G30680 313 / 1e-100 toprim domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0413 [flax] [poplar] Toprim-like PF01751 [flax] [poplar] Toprim Toprim domain CL0023 [flax] [poplar] P-loop_NTPase PF03796 [flax] [poplar] DnaB_C DnaB-like helicase C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10023379 pacid=23181073 polypeptide=Lus10023379 locus=Lus10023379.g ID=Lus10023379.BGIv1.0 annot-version=v1.0 ATGGCCTCCAAGTTCTTCCCCAAGCCCACCACCGCACCTTCGTCCCTCCTCACATCTCATCCTCTTCCTTGTCTGTTTTCTTCCAGTACACGATTACCCC TCGTCGGAAAACGCTTCTTCCAAGTGCTTTGCTCCAAACCCAACTCTAATAAAAACCACTCTCGTTCCCTCTACACTAATGGTCATGCCACTGTTCCTGT TCCCCCACCAGCTGATATGACGGACGGCGTTGGCTGGAAGGGCGACGTTTTACGGCAAAAATTGGCAGATTCTGGAATTGAAATGGATATCATAGCACCT GGCCAGTATAATGGCTTATATTGCCCCAAGTGTGAAGGTGGTGATTCCAGGGAAAAATCGTTCTCTATTGTCATCAGTCCTGATGGTGGCGGAGCAACGT GGATATGTCATAGGGGTAAATGTGGATGGACTGGCGGAACAAAACTGCAGAATGTTGCGAATTCACTGTCTAGAATCCCAGTCCAACAAAATCGCAAAAA GTTAAAAAGAGAAATTACAGAGGAGAGTCTGCAGTTGAAGCCATTATGCAATGAGCTCATTGGTTACTTCAAAGAACGGGACATATCCCGTGAAACTTTG GTGAGAAATGGTGTCATGCAAAAGGCCTACGAGAATCAGATTGTTATTGCTTTCACTTATAGGAAAAATGGGAATCTGGTCAGCTGCAAGTATCGGGATA TCAACAAGAAATTTTGGCAGGAAAAGGATACAGAAAAGATATTTTATGGGTTGGATGACATAAAGGGAGCTGATGACATTATCATTGTTGAAGGTGAAAT TGACAAGCTTGCAATGGAAGAGGCTGGATTTCGTAACTGTGTTAGTGTGCCTGATGGGGCACCTCCACTGGTCTCATCCAAGGATTTGCCACCCGAAACC CAGGACACAAAGTATCAGTACCTCTGGAATTGCAAAGAATATTTGAAACAGGCATCCCGCATCATACTTGCTACTGATGGGGACCCTCCGGGTCAAGCAT TGGCAGAAGAGCTTGCACGACGTCTTGGAAGAGAAAGGTGCTGGCGAGTCAAATGGCCAAAGAAAAATGGAGATAGTTATTGCAAAGATGCGAATGAGGT TCTGATGTATTTGGGCCCTCAAGCTCTGAAGGACGCACTTGACAGTGCTGAATTATATCCCATCAAAGGGTTGTTCCTCTTCAGAGATTTCTTTGATGAA ATCGATTCATATTATCATCAAACTCAAGGGTATCACTTTGGCGTCTCAACAGGGTGGAAGGCTTTGGATGGGTTGTACAGTGTTTTGCCGGGAGAGTTGA CTATTGTAAGTGGGGTTCCGAATTCTGGCAAAAGTGAGTGGATTGATGCACTTTTATGCAACCTTAACAAAACTGCTGGTTGGAAATTTGCACTCTGCTC CATGGAGAACAAGGTTCGAGATCATGCCAGGAAACTGATGGAGAAACACCTTAAAAAACCGTTCTTTGATGCTCCGTATGGACAATCTGCTGAACGTCTG AGTACCGAGGAGTATGAGCGAGGGAAGCAGTGGTTAAATGATACATTCTATCTCATAAGATGTGAAGATGATGCACTTCCAAGCATAAGATGGGTTCTTA GTCTTGCAAAGGCAGCAGTCCTGAGATATGGCGTCCGTGGCCTAGTCATTGATCCGTACAATGAACTTGATCATCAGCGTCCACCTAACATGACCGAGAC GGAGTATGTAAGTCAGATGTTGACTCTGGTAAAAAGATTTGCTCAACACCATTCATGTCATGTGTGGTTTGTTGCACATCCCAGGCAGTTGCACAACTGG ATTGGAGGACCCCCTAATATGTATGATATAAGCGGGAGTGCCCATTTCATAAACAAATGTGACAACGGGATTATCATTCACCGGAACCGAAATCCTGATG CTGGGGAAGTTGATCAAGTCCAGATTTGTGTACGTAAGGTGAGAAACAAGGTAGTGGGAACCATAGGAGAAGGATACCTGTCATATAACAGGGTGACTGG GGAATATGTGGATATTGAACAAGATCGTGGCCGAAAATGA
AA sequence Show only first row Show all	>Lus10023379 pacid=23181073 polypeptide=Lus10023379 locus=Lus10023379.g ID=Lus10023379.BGIv1.0 annot-version=v1.0 MASKFFPKPTTAPSSLLTSHPLPCLFSSSTRLPLVGKRFFQVLCSKPNSNKNHSRSLYTNGHATVPVPPPADMTDGVGWKGDVLRQKLADSGIEMDIIAP GQYNGLYCPKCEGGDSREKSFSIVISPDGGGATWICHRGKCGWTGGTKLQNVANSLSRIPVQQNRKKLKREITEESLQLKPLCNELIGYFKERDISRETL VRNGVMQKAYENQIVIAFTYRKNGNLVSCKYRDINKKFWQEKDTEKIFYGLDDIKGADDIIIVEGEIDKLAMEEAGFRNCVSVPDGAPPLVSSKDLPPET QDTKYQYLWNCKEYLKQASRIILATDGDPPGQALAEELARRLGRERCWRVKWPKKNGDSYCKDANEVLMYLGPQALKDALDSAELYPIKGLFLFRDFFDE IDSYYHQTQGYHFGVSTGWKALDGLYSVLPGELTIVSGVPNSGKSEWIDALLCNLNKTAGWKFALCSMENKVRDHARKLMEKHLKKPFFDAPYGQSAERL STEEYERGKQWLNDTFYLIRCEDDALPSIRWVLSLAKAAVLRYGVRGLVIDPYNELDHQRPPNMTETEYVSQMLTLVKRFAQHHSCHVWFVAHPRQLHNW IGGPPNMYDISGSAHFINKCDNGIIIHRNRNPDAGEVDQVQICVRKVRNKVVGTIGEGYLSYNRVTGEYVDIEQDRGRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30680			toprim domain-containing prote...		Lus10023379 [exp]	0	1
AT1G63680		APG13, ATMURE, ...	PIGMENT DEFECTIVE EMBRYO 316, ...		Lus10002010 [exp]	4.4	0.9384
AT4G38020			tRNA/rRNA methyltransferase (S...		Lus10035953 [exp]	4.9	0.9229
AT5G63630			P-loop containing nucleoside t...		Lus10004017 [exp]	4.9	0.9300
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10008940 [exp]	5.5	0.9318
AT1G30680			toprim domain-containing prote...		Lus10038434 [exp]	6.9	0.8949
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Lus10036490 [exp]	7.1	0.9171
AT3G63370		OTP86	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10014707 [exp]	8.7	0.8833
AT5G23310		FSD3	Fe superoxide dismutase 3 (.1)		Lus10017378 [exp]	8.8	0.9110
AT3G06730		TRXz, TRXP ,TRX...	thioredoxin putative plastidic...		Lus10039499 [exp]	9.5	0.9147
AT4G32520		AtSHMT3, SHM3	serine hydroxymethyltransferas...		Lus10005916 [exp]	9.8	0.9019

Compare expression of checked genes

Lus10023379 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.