Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30660 294 / 2e-97 nucleic acid binding;nucleic acid binding (.1) AT1G30680 303 / 1e-96 toprim domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038433 [exp] 605 / 0 AT1G30680 297 / 5e-100 toprim domain-containing protein (.1) Lus10038434 [exp] 322 / 3e-104 AT1G30680 852 / 0.0 toprim domain-containing protein (.1) Lus10023379 [exp] 321 / 8e-104 AT1G30680 855 / 0.0 toprim domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G461200 [exp] 440 / 3e-154 AT1G30680 313 / 1e-100 toprim domain-containing protein (.1) Potri.001G461300 [exp] 327 / 5e-106 AT1G30680 828 / 0.0 toprim domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0413 [flax] [poplar] Toprim-like PF01751 [flax] [poplar] Toprim Toprim domain
Representative CDS sequence Show only first row Show all	>Lus10023380 pacid=23180990 polypeptide=Lus10023380 locus=Lus10023380.g ID=Lus10023380.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCATTTGTACCGGCGGTTGGGCTTCTACTCCGGCCACGTCATGGCTTCCTGCCTTCCTACGCGACAGTCCCCAAACTGCGTCTTGTCATCT CCGCAAATGCTGCTGCAACCGGTACGGAAGTAGGACCCCCGGTTGAGGTCGGCCACAAACTGAAGATGCTCAAGAATAAAATGGCGACACTCGAGATTAA AATGGATGATTCATGCGAGCCTGGACAGTTCAGTCACTTGCTTTGCCCTAAGTGCAAAGGTGGCAAGACGATGGAGACATGCTTATCTTTCCACATTATC CAAGACGGGGACTTTGCAATGTGGAGGTGTTTTCGTCCTAGTTGTGGATGGGCAGGGCAGGCTTTTGCTGACCAAAGGGAAACCATTGATGGAATGAACT TGATTATCAAAGTTGAGTCAAGTGACAAGTTGACCTTTGACGACTTGGGATTAGAGCCCTTAGGGAACAAGTTGATTAGCTTCTTCAACGAGAGAAAGAT TTCTGAGGAAACCTTGCAAAGGAATGCTGTTATGCAGACATCTCAGGGTGTCATTGCTTTTACTTATAGAGAAAATGGATTGATTGTTGGCTGCAAGTAC CGGACTCTAGAAAAAAGGTTTTGGCTGGTAGGTGAAGTTGAGACAGGAACCGAAAAATGGTTCTATGGGCTTGACGACATAAATGAAGCAACGGAGCTAA TTATAGTTGAAGGGGAAATAGATAAACTTTCTTTCGAGGAAGCTGGCTTCTGTAATTGTGTGAGTGTGCCGGCCGGTGCCCCAATGGAAGTTTCCTCTAG GGGTTTACCTTCTCCAAGAAAGGATAGAGCATTTAAGTTTGTCTGGAACTGCAAAGAGTACCTGGATAAGGTTCCGCGCATTGTCCTGGCTACTGATGGT GACTCTTCTGGACAAGCACTAGCAGAAGAGCTAGCACGCCGGTTGGGGAAAGAAAGATGTTGGATTGTGCGTTGGCCCCGGAAAGACGACTCCAGTTTCT TCAAAGATGCAAATGAGGTTCTCGTATCATTGGGACCTAAAGCTTTGACAGAAGCAATTGAAAGCGCAGAGTTATATGGTAGTGATATGATCAAGGATCC AGAAGCTGCAGAGGATGATCGTGCTGATGGATATCCGGATGACTGGAAGATTGTTGACTAA
AA sequence Show only first row Show all	>Lus10023380 pacid=23180990 polypeptide=Lus10023380 locus=Lus10023380.g ID=Lus10023380.BGIv1.0 annot-version=v1.0 MAAAFVPAVGLLLRPRHGFLPSYATVPKLRLVISANAAATGTEVGPPVEVGHKLKMLKNKMATLEIKMDDSCEPGQFSHLLCPKCKGGKTMETCLSFHII QDGDFAMWRCFRPSCGWAGQAFADQRETIDGMNLIIKVESSDKLTFDDLGLEPLGNKLISFFNERKISEETLQRNAVMQTSQGVIAFTYRENGLIVGCKY RTLEKRFWLVGEVETGTEKWFYGLDDINEATELIIVEGEIDKLSFEEAGFCNCVSVPAGAPMEVSSRGLPSPRKDRAFKFVWNCKEYLDKVPRIVLATDG DSSGQALAEELARRLGKERCWIVRWPRKDDSSFFKDANEVLVSLGPKALTEAIESAELYGSDMIKDPEAAEDDRADGYPDDWKIVD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30680			toprim domain-containing prote...		Lus10023380 [exp]	0	1
AT5G38360			alpha/beta-Hydrolases superfam...		Lus10009166 [exp]	1.0	0.9676
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10024297 [exp]	1.7	0.9573
AT5G23310		FSD3	Fe superoxide dismutase 3 (.1)		Lus10010174 [exp]	2.2	0.9534
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015110 [exp]	2.4	0.9634
AT5G64050		ATERS, ERS, OVA...	OVULE ABORTION 3, glutamate tR...		Lus10022659 [exp]	4.0	0.9475
AT1G55140			Ribonuclease III family protei...		Lus10037645 [exp]	4.9	0.9391
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Lus10011170 [exp]	7.7	0.9510
AT1G10522			unknown protein		Lus10030655 [exp]	8.7	0.9343
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10035739 [exp]	8.8	0.8995
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10027371 [exp]	9.9	0.9385

Compare expression of checked genes

Lus10023380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.