Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30610 734 / 0 EMB88, EMB2279 EMBRYO DEFECTIVE 88, EMBRYO DEFECTIVE 2279, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT5G67570 367 / 1e-113 EMB246, DG1, EMB1408 EMBRYO DEFECTIVE 246, embryo defective 1408, DELAYED GREENING 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 115 / 2e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 111 / 6e-25 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G02860 111 / 8e-25 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 110 / 1e-24 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G65560 110 / 2e-24 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 109 / 2e-24 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63400 107 / 1e-23 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 107 / 1e-23 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025202 [exp] 380 / 1e-118 AT5G67570 800 / 0.0 EMBRYO DEFECTIVE 246, embryo defective 1408, DELAYED GREENING 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012091 [exp] 372 / 2e-115 AT5G67570 805 / 0.0 EMBRYO DEFECTIVE 246, embryo defective 1408, DELAYED GREENING 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002107 [exp] 112 / 5e-25 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039149 [exp] 106 / 4e-23 AT3G18110 976 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013832 [exp] 103 / 3e-22 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042068 [exp] 103 / 3e-22 AT2G41720 1057 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10027916 [exp] 102 / 4e-22 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026545 [exp] 103 / 5e-22 AT2G17140 1002 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021074 [exp] 99 / 9e-22 AT1G62930 273 / 5e-86 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G459900 [exp] 785 / 0 AT1G30610 782 / 0.0 EMBRYO DEFECTIVE 88, EMBRYO DEFECTIVE 2279, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Potri.007G004900 [exp] 381 / 3e-118 AT5G67570 862 / 0.0 EMBRYO DEFECTIVE 246, embryo defective 1408, DELAYED GREENING 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G069600 [exp] 111 / 8e-25 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G038300 [exp] 108 / 3e-24 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 103 / 1e-22 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G045000 [exp] 102 / 2e-22 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 100 / 3e-21 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 98 / 1e-20 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.002G109500 [exp] 97 / 1e-20 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.009G092100 [exp] 98 / 2e-20 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10023384 pacid=23181035 polypeptide=Lus10023384 locus=Lus10023384.g ID=Lus10023384.BGIv1.0 annot-version=v1.0 ATGGAGATGTCTGTGATGGCGAATACGCAAATGGGTCTTCCTCATCCCGAAACAAGCTGTAGCTGTAGGTGGATTACAGATTCTCCCTATGGGTTTCTGA ATTCCCGGCAACCCTTTTTCTCCGTTCCTGCAAGCATCAAAAGTAGGAACAAATTTGGGCGTATGAGGATTAAGGCGGAGAAGGAAGAATTAGGGTTCAA GCCGTCTTTTGGAGAGTACTTGAAAGTTATGGAGCGTGTGAAAACTGGCCGAGAGAAGAAGCTAACGGATAATTTGAAGGGAGATGGAGAAAATGGAAAC ATTGACAGGTTGACAGGATTTGGTGGTCAAGACAAGGCACCTAAGTCCAGCTTCAGACCAAATGATAAGCTTCCTGGCAGCGAGGGAGGTGATTTTCCGG AAGCTGTTGTTAATGGTGGTAAGTTTGTTCATGAAAGAAACATGATTAGAAGAGGGAATGATGTATCTAGCACCATTCGTTTTGATGCTAATGTACAGAG TAGGATAGGAGGGAGAGCAATGGATGAAAAACCGTTAGGTGGTCGAAATTCTAGAATGAATCGAGAGTTAGGGAATTCGAACATAGTGAAGGTTGATAAG ATGGAGAATGTTGGTGATGCTATGGTCAATCGCAGCAGTATCGAAGCTAGAGAGAGCAAAAGGGAAAGCTCGACTGGAGCTTGGGTAAGAAAAAAGAATG TCTTGGATAATGTGGGGGGAATCTCTGTTGTAGTTGGTGATGTTAAGGTCAATGGCAGCAGTATCACGATTAAGGAGCGAGATAGTGACAGGGAAAGCTC GACTGGAGCTTGGGTAAGAAAAAGGAAGGAAGTTGGTGTTAGACCAGAAGAAGCAACGAGTTACAGACCTGTGGCGAATTTCCTCCAGGTTAAAGAGATT ATTACTCCAAGTGAAACTATGCAGAAAAATGGGATGCTGCGTGAAAAGAAGTGGCTTCACCGTAAAAACGTTGGAGATAGTGATTCGAAAGCGGACAGAG CGGCCTTCAAAACATTGGAGGATTCGGAGTATGTTGTCCGAAGGATACCGGCTTCCAAACGAGAAGTGGAAGATAGGATCCAGAAGCTAGCGACTTGTTT AAATGGCGCAGACATAGATGTGCCAGAGTGGATGTTCTCTAAGATGATGCGAAGTGCCAAAATGAAGTATACCGATCATAATGTTCTGAGGCTCATTCAG ATATTAGGTAAACTGGGAAATTGGAGGCGAGTCTTACAAGTCATCGAGTGGCTTCAGCTACGTGACCGGTTTAAATCTCACAACCCGCGGTTTATCTATA CAACTGCCCTTCATGTACTTGGAAAGGCAAGAAGGCCTGTAGAGGCACTAAATCTGTTTTATGTAATGCAGAAACGTGTAGCTACCTATCCTGACTTGGT AGCTTATCATTCGATAGCCGTCACTCTTGGGCAAGCAGGCTATATGAAAGAACTTTTTGATGTTATTGACAGCATGCAGTCTCTTCCTCCTAAGAAGAAG AACAAAGAAGGGTTTCTTGAGACTTGGGACCCCAGGTTAGAACCTGATGTGGTCGTTTACAATGCGGTGCTCAACGCCTGTGTCCGGAGAAAACAATGGG AAGGTGCATTTTGGGTTTTGCAGCAGTTGAAGGAACAAAAGCAAAAACCTTCCACTGCAACATATGGGCTAGTAATGGAGGTCATGTTTGTCTGCGAGAA GTACAACTTGGTTCATGAGTTTTTCCGGAAACTGCAGAAATCTTCTATTCCTGATGCTTTAGCGTATCGAGTTGTTGTGAATACTCTGTCGAAAGAAGGC AAGCCAGATGAAGCTGTTTTGGCCGTTCAAGAGATGGAAAGCCGAGGAATCGTGGGTTCTGCTGCCCTTTATTACGATCTTTCTCGCTGTCTTTGTAGTG CCGGAAGGTGTGAAGAAGCTTTATCTCAGGTTGACAAAATATGTAGAGTGGCCAATAAGCCTCTGGTAGTAACTTACACCGGACTAATACAAGCATGCCT GGAAGCTGGACGAACCGAAGATGCATCGTACATCTTTAGCCACATGAAGCAGTTCTGCTCCCCGAATCTTGTCACTTGCAACATAATGCTCAAAGGTTAT CTGGACCATGGACGGTTTGAAGAAGCGAGGTCGCTCTTCGACAAGATGTTAGACGACAGCAAGCAGATCGGCAGTAGATTAGATGATGACACGGTCGGAG TAGTTCCCGATATCTACTCCTTCAACACGATGTTAGAGGCTTGTGTTGCAGAGCAGAGGTGGGATGATTTTGGGCATGTGTATGAAATGATGTTGCACCA TGGACACCACTTCAATGCAAGGCGTCACGTTCGCTTGGTCTTGGAAGCTGCCAGAGGTGGAAAGGAGGAAGTGGTGGAAATAACATGGAAACACTTGGCT CGGGTCGGTTGGGTTCCTCCGCCTCCAATCATCAAGGAAAGATTCTGCCAAATGCTCGAGAAATGCGACTGCGATTCTGCTCTGGAATGTGTTGCTTCTG CTGCGACGAATCACGAGGAGAGTCCAGCATTCAACAAAACTGGGTGGTTGAATCTGTTGAAAGATAATTCTCACAGGTTCAGTAGGGAAACCGTTATTGA GCTTTTGCACAAGGCCAAATTGTTAGTTTCTGAAAACAATGGTGTTGTTGTTGCTAATACTCCCTTGGATACTCTGGATTGTGTGACATGGGATGATGCC ATAATGGAGCATCTAAGTGAGTCTTCATGGGGTACAAACCCAGTCCATTTTTAA
AA sequence Show only first row Show all	>Lus10023384 pacid=23181035 polypeptide=Lus10023384 locus=Lus10023384.g ID=Lus10023384.BGIv1.0 annot-version=v1.0 MEMSVMANTQMGLPHPETSCSCRWITDSPYGFLNSRQPFFSVPASIKSRNKFGRMRIKAEKEELGFKPSFGEYLKVMERVKTGREKKLTDNLKGDGENGN IDRLTGFGGQDKAPKSSFRPNDKLPGSEGGDFPEAVVNGGKFVHERNMIRRGNDVSSTIRFDANVQSRIGGRAMDEKPLGGRNSRMNRELGNSNIVKVDK MENVGDAMVNRSSIEARESKRESSTGAWVRKKNVLDNVGGISVVVGDVKVNGSSITIKERDSDRESSTGAWVRKRKEVGVRPEEATSYRPVANFLQVKEI ITPSETMQKNGMLREKKWLHRKNVGDSDSKADRAAFKTLEDSEYVVRRIPASKREVEDRIQKLATCLNGADIDVPEWMFSKMMRSAKMKYTDHNVLRLIQ ILGKLGNWRRVLQVIEWLQLRDRFKSHNPRFIYTTALHVLGKARRPVEALNLFYVMQKRVATYPDLVAYHSIAVTLGQAGYMKELFDVIDSMQSLPPKKK NKEGFLETWDPRLEPDVVVYNAVLNACVRRKQWEGAFWVLQQLKEQKQKPSTATYGLVMEVMFVCEKYNLVHEFFRKLQKSSIPDALAYRVVVNTLSKEG KPDEAVLAVQEMESRGIVGSAALYYDLSRCLCSAGRCEEALSQVDKICRVANKPLVVTYTGLIQACLEAGRTEDASYIFSHMKQFCSPNLVTCNIMLKGY LDHGRFEEARSLFDKMLDDSKQIGSRLDDDTVGVVPDIYSFNTMLEACVAEQRWDDFGHVYEMMLHHGHHFNARRHVRLVLEAARGGKEEVVEITWKHLA RVGWVPPPPIIKERFCQMLEKCDCDSALECVASAATNHEESPAFNKTGWLNLLKDNSHRFSRETVIELLHKAKLLVSENNGVVVANTPLDTLDCVTWDDA IMEHLSESSWGTNPVHF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30610		EMB88, EMB2279	EMBRYO DEFECTIVE 88, EMBRYO DE...		Lus10023384 [exp]	0	1
AT1G70200			RNA-binding (RRM/RBD/RNP motif...		Lus10010710 [exp]	1.0	0.9217
AT1G52670			Single hybrid motif superfamil...		Lus10011480 [exp]	8.1	0.8899
AT3G59040			Tetratricopeptide repeat (TPR)...		Lus10027829 [exp]	11.2	0.8887
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Lus10028726 [exp]	11.4	0.8981
AT5G55220			trigger factor type chaperone ...		Lus10010250 [exp]	12.9	0.9061
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10026888 [exp]	14.7	0.8956
AT2G17695			unknown protein		Lus10041839 [exp]	16.7	0.8888
AT5G55580			Mitochondrial transcription te...		Lus10003775 [exp]	21.2	0.8953
AT5G64050		ATERS, ERS, OVA...	OVULE ABORTION 3, glutamate tR...		Lus10022659 [exp]	30.2	0.8884
AT3G12930			Lojap-related protein (.1)		Lus10027381 [exp]	33.5	0.8476

Compare expression of checked genes

Lus10023384 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.