Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30630 476 / 1e-171 Coatomer epsilon subunit (.1) AT2G34840 473 / 2e-170 Coatomer epsilon subunit (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003497 [exp] 493 / 3e-178 AT1G30630 467 / 2e-168 Coatomer epsilon subunit (.1) Lus10038422 [exp] 491 / 1e-177 AT1G30630 452 / 1e-162 Coatomer epsilon subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G155800 [exp] 492 / 6e-178 AT1G30630 506 / 0.0 Coatomer epsilon subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF04733 [flax] [poplar] Coatomer_E Coatomer epsilon subunit
Representative CDS sequence Show only first row Show all	>Lus10023385 pacid=23180919 polypeptide=Lus10023385 locus=Lus10023385.g ID=Lus10023385.BGIv1.0 annot-version=v1.0 ATGGCGTCGGCACCCGATCACCTCTTCAATCTACGCAACAATTTCTACTTGGGAGCATTCCAGGCTGCGATCAACAGCAGCGACGTTACCAATCTGTCCC CGGAGGATGCTGTTGAGCGGGACTGCCTCGTCCACCGCTCTTACATCGCTCTTCGAAGCCATCAGCTCGTGATCAGTGAGATCGACGATAGAGCTGCAAC TCCTCTCCAGGCAGTCAAGTTGCTCGCCTTATACCTCTCAAACTCTGATAATAAGCAATCTGTAATTGTGAGCTTGAAAGAGTGGCTAGCTGATTCAGCT ATTGGAAATAATGCCATTTTGAGGCTCATTGCTGGGATCATATTCATGAATGAAGAGGACTATAATGAGGCTCTGAAGCACACTCATGCTGGAGGAACCA TGGAACTGCATGCATTGAATGTTCAAATTTTCATCAAGATGCACAGAACAGATTTTGCAGAAAAGCAGCTAAGAGTAATGCAACAGATTGATGAGGACCA TACGCTTACTCAGCTTGCAAATGCATGGGTGAATCTGGCTGTTGGCGGTTCAAAAATACGAGAAGCTCTACTCATATTCCAAGATTTATCGGAGAAATAT CCCATGACAGGATTAATATTGAATGGGAAGGCTGTTTGTTGCATGCACATGGGTACCTTTGATGAAGCAGAGGCATTGCTCCTTGAAGCACTAAACAAGG CAAGTTCGTGCGATGGAAAGGATCCAGAAACCCTTGCCAACCTGGTTGTATGTAATCTTCACCTCGGCAAACCATCTTCACGTTATCTCAACCAGTTGAA GCTTTCGGAACCGGAACACGTCCTCCTGAAGCGTGTAACCTCGGCCGAAGATAGCTTCGAAAGAGCAGTCCAAACAGTTGCATGA
AA sequence Show only first row Show all	>Lus10023385 pacid=23180919 polypeptide=Lus10023385 locus=Lus10023385.g ID=Lus10023385.BGIv1.0 annot-version=v1.0 MASAPDHLFNLRNNFYLGAFQAAINSSDVTNLSPEDAVERDCLVHRSYIALRSHQLVISEIDDRAATPLQAVKLLALYLSNSDNKQSVIVSLKEWLADSA IGNNAILRLIAGIIFMNEEDYNEALKHTHAGGTMELHALNVQIFIKMHRTDFAEKQLRVMQQIDEDHTLTQLANAWVNLAVGGSKIREALLIFQDLSEKY PMTGLILNGKAVCCMHMGTFDEAEALLLEALNKASSCDGKDPETLANLVVCNLHLGKPSSRYLNQLKLSEPEHVLLKRVTSAEDSFERAVQTVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30630			Coatomer epsilon subunit (.1)		Lus10023385 [exp]	0	1
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10019925 [exp]	1.0	0.8816
AT4G08520			SNARE-like superfamily protein...		Lus10037624 [exp]	2.0	0.8661
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Lus10035159 [exp]	3.5	0.8494
AT5G62930			SGNH hydrolase-type esterase s...		Lus10027675 [exp]	3.6	0.7983
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10031436 [exp]	5.7	0.7951
AT5G27930			Protein phosphatase 2C family ...		Lus10015206 [exp]	7.7	0.7957
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10008227 [exp]	8.1	0.8372
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10026495 [exp]	9.6	0.8430
AT1G77580			Plant protein of unknown funct...		Lus10010888 [exp]	14.0	0.8413
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Lus10031990 [exp]	14.1	0.7923

Compare expression of checked genes

Lus10023385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.