Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02230 309 / 2e-103 Ribosomal protein L19e family protein (.1) AT1G02780 306 / 3e-102 EMB2386 embryo defective 2386, Ribosomal protein L19e family protein (.1) AT3G16780 305 / 5e-102 Ribosomal protein L19e family protein (.1) AT1G05270 275 / 5e-88 TraB family protein (.1) AT2G32340 270 / 3e-86 TraB family protein (.1) AT5G52030 86 / 2e-18 TraB family protein (.1.2) AT4G16030 61 / 3e-11 Ribosomal protein L19e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038420 [exp] 384 / 1e-129 AT1G05270 371 / 6e-127 TraB family protein (.1) Lus10038417 [exp] 341 / 6e-116 AT3G16780 348 / 9e-124 Ribosomal protein L19e family protein (.1) Lus10038418 [exp] 334 / 2e-112 AT3G16780 337 / 3e-118 Ribosomal protein L19e family protein (.1) Lus10016829 [exp] 320 / 1e-107 AT3G16780 363 / 2e-129 Ribosomal protein L19e family protein (.1) Lus10023388 [exp] 315 / 6e-106 AT3G16780 324 / 2e-114 Ribosomal protein L19e family protein (.1) Lus10037707 [exp] 303 / 7e-98 AT3G16780 343 / 8e-118 Ribosomal protein L19e family protein (.1) Lus10015104 [exp] 296 / 4e-96 AT1G05270 447 / 4e-158 TraB family protein (.1) Lus10038419 [exp] 237 / 5e-75 AT1G05270 68 / 3e-13 TraB family protein (.1) Lus10031571 [exp] 237 / 9e-74 AT1G05270 368 / 3e-127 TraB family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G037500 [exp] 315 / 6e-106 AT1G02780 317 / 2e-111 embryo defective 2386, Ribosomal protein L19e family protein (.1) Potri.015G029500 [exp] 315 / 8e-106 AT3G16780 309 / 5e-108 Ribosomal protein L19e family protein (.1) Potri.017G140800 [exp] 313 / 6e-105 AT3G16780 315 / 2e-110 Ribosomal protein L19e family protein (.1) Potri.004G078000 [exp] 311 / 4e-104 AT1G02780 309 / 4e-108 embryo defective 2386, Ribosomal protein L19e family protein (.1) Potri.007G121900 [exp] 283 / 2e-90 AT1G05270 404 / 7e-140 TraB family protein (.1) Potri.017G038500 [exp] 270 / 2e-86 AT1G05270 417 / 1e-146 TraB family protein (.1) Potri.015G037100 [exp] 230 / 5e-73 AT1G02780 201 / 5e-66 embryo defective 2386, Ribosomal protein L19e family protein (.1) Potri.007G121800 [exp] 218 / 4e-66 AT1G05270 323 / 6e-109 TraB family protein (.1) Potri.012G133900 [exp] 100 / 1e-22 AT5G52030 426 / 7e-149 TraB family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01280 [flax] [poplar] Ribosomal_L19e Ribosomal protein L19e CL0572 [flax] [poplar] TIKI PF01963 [flax] [poplar] TraB TraB family
Representative CDS sequence Show only first row Show all	>Lus10023387 pacid=23181078 polypeptide=Lus10023387 locus=Lus10023387.g ID=Lus10023387.BGIv1.0 annot-version=v1.0 ATGGTGTCCGTCAAGCTCCAGAAGAGGCTCGCCGCGAGTGTCATGAAGTGCGGCAAGAAGAAGGTCTGGCTCGATCCAAATGAGGTCAACGAAATCTCCA TGGCCAACTCTCGCCAAAACATCAGGAAGCTCGTCAAGGATGGGTTCATCATCAGGAAGCCAACCAACATCCACTCCCGTTCCCGAGCTCGCCGTATGAA TGAAGCCAAGAAGAAGGGACGTCATTCTGGTTACGGTAAAAGGAAGGGAACTAGGGAGGCTAGGCTTCCAACAAAGATTCTGTGGATGAGGAGAATGCGA GTTCTTAGGAGGCTTCTGAGGAAGTATAGGGAAGCAAAGAAGATTGACAGGCACATGTACCATGACATGTACATGAAGTGCAAGGGTAATGTCTTCAAGA ACAAGCGTGTGCTCATGGAGAGTATTCACAAGTCCAAGGCAGAGAAGGCCAGAGAGAAGACCTTGTCTGATCAGTTCGAGGCTAAGAGGGCCAAGAACAA GGCTAGCAGGGAAAGGAAGCATGCCAGGCGGGAGGAACGATTTGCCCAGGGTCCAGTAGTTGCTGAGAAACCTGCTGCTCCAGCTGTTGCTGCACCTCAA GCAACTGGTCGAAAACTCGTAGCGCTCCCCATTATGAATCGGTTAACTCGGCATGTCCCGACGTTTGACTCGCTCCATTTATCCCGCTCCGCTGCCGCCG GCACGGTTGTCACTAACAAGTTACGCCTCGGCGGTAAACAAAACCCTCCGCTATTCCACCGCTTCATTCGGTTTCCACACCAGAATGCCGCCACCTCCCG AACATGCAACTCTTATTCCACAGAAGGAAAGGTTCGCTTGCCGCCGGAATCCTCACGCGCCGGGAGTAGCAGTCCGGTGAGAGGAAGTACATTGCTGTCG AGAACGGTCGTGCTGACGTGTCAGTCCACCGCTGAAACTGGCTCTTGCAATGTGGTCTTGGTTGGCACGATTCGCGGTTCAGAGAAATCTTGCAGAGAAG TTGAAGCTGTCATCCGTTACTTGGAACCGGAGGTAGTCTTTCTGGAGTTGTGCTCTGCTCGAAAGGATTTGCTTACACGGCAGGATTCAACGATTGCCAG CAAACTTGAAGTGTTTCCGGGTTCAGAGTTCCGTGTGGCATCAGAAGAAGCAAAAGCATATGGTGCTAAAGTGATACTTGGAGATCGTCCTGTACAGGTA ACATTGCAGAGAACATGGCGGAAAATGCCACTTCGGCATAAGGCAAAACTAGTATACTCTTTAGCTTTTGGAGCAGTCTTCGTACCACGTCCTGTGAAGC TGACGAGAATGGCAAGTCTCAAGGAGATGGAAGATGACGATATGTTGACTCTTGCGATTCGAGAAATGAGCAAGGCATACCCCACTCTTATGGAAACCTT GGTGCATGAGCGAGATCAGTACATGGCATCCATGTTGCATAAAGTTGCTAGTGAGCATTCGCTGGTCGTTGCAGTTGTCGGAAGAGGCCATCTTCAAGGA ATTAAGAAGCATTGGCAACAGCCTGTTTCAGTGAGCGATATTACTTCTATAACTGAGATTTGCATTCAACAACCGTTTGTTGGATCTTAA
AA sequence Show only first row Show all	>Lus10023387 pacid=23181078 polypeptide=Lus10023387 locus=Lus10023387.g ID=Lus10023387.BGIv1.0 annot-version=v1.0 MVSVKLQKRLAASVMKCGKKKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTNIHSRSRARRMNEAKKKGRHSGYGKRKGTREARLPTKILWMRRMR VLRRLLRKYREAKKIDRHMYHDMYMKCKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERFAQGPVVAEKPAAPAVAAPQ ATGRKLVALPIMNRLTRHVPTFDSLHLSRSAAAGTVVTNKLRLGGKQNPPLFHRFIRFPHQNAATSRTCNSYSTEGKVRLPPESSRAGSSSPVRGSTLLS RTVVLTCQSTAETGSCNVVLVGTIRGSEKSCREVEAVIRYLEPEVVFLELCSARKDLLTRQDSTIASKLEVFPGSEFRVASEEAKAYGAKVILGDRPVQV TLQRTWRKMPLRHKAKLVYSLAFGAVFVPRPVKLTRMASLKEMEDDDMLTLAIREMSKAYPTLMETLVHERDQYMASMLHKVASEHSLVVAVVGRGHLQG IKKHWQQPVSVSDITSITEICIQQPFVGS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16780			Ribosomal protein L19e family ...		Lus10023387 [exp]	0	1
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10021315 [exp]	2.4	0.8988
AT1G60080			3'-5'-exoribonuclease family p...		Lus10021789 [exp]	2.4	0.8762
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10043388 [exp]	4.7	0.8943
AT5G28060			Ribosomal protein S24e family ...		Lus10004123 [exp]	4.9	0.8796
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10032198 [exp]	6.5	0.8496
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10006609 [exp]	7.1	0.8799
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10020398 [exp]	7.5	0.8715
AT5G59240			Ribosomal protein S8e family p...		Lus10025887 [exp]	7.7	0.8762
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10023172 [exp]	8.9	0.8620
AT1G57720			Translation elongation factor ...		Lus10033213 [exp]	9.7	0.7947

Compare expression of checked genes

Lus10023387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.