Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02230 285 / 6e-99 Ribosomal protein L19e family protein (.1) AT3G16780 282 / 6e-98 Ribosomal protein L19e family protein (.1) AT1G02780 281 / 3e-97 EMB2386 embryo defective 2386, Ribosomal protein L19e family protein (.1) AT4G16030 60 / 6e-12 Ribosomal protein L19e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038417 [exp] 315 / 1e-110 AT3G16780 348 / 9e-124 Ribosomal protein L19e family protein (.1) Lus10023387 [exp] 316 / 1e-106 AT3G16780 343 / 1e-116 Ribosomal protein L19e family protein (.1) Lus10038418 [exp] 306 / 2e-106 AT3G16780 337 / 3e-118 Ribosomal protein L19e family protein (.1) Lus10016829 [exp] 295 / 9e-103 AT3G16780 363 / 2e-129 Ribosomal protein L19e family protein (.1) Lus10037707 [exp] 278 / 7e-93 AT3G16780 343 / 8e-118 Ribosomal protein L19e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G029500 [exp] 291 / 2e-101 AT3G16780 309 / 5e-108 Ribosomal protein L19e family protein (.1) Potri.012G037500 [exp] 291 / 2e-101 AT1G02780 317 / 2e-111 embryo defective 2386, Ribosomal protein L19e family protein (.1) Potri.017G140800 [exp] 290 / 9e-101 AT3G16780 315 / 2e-110 Ribosomal protein L19e family protein (.1) Potri.004G078000 [exp] 285 / 4e-99 AT1G02780 309 / 4e-108 embryo defective 2386, Ribosomal protein L19e family protein (.1) Potri.015G037100 [exp] 209 / 4e-69 AT1G02780 201 / 5e-66 embryo defective 2386, Ribosomal protein L19e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01280 [flax] [poplar] Ribosomal_L19e Ribosomal protein L19e
Representative CDS sequence Show only first row Show all	>Lus10023388 pacid=23180907 polypeptide=Lus10023388 locus=Lus10023388.g ID=Lus10023388.BGIv1.0 annot-version=v1.0 ATGAAGTGCGGCAAGAAGAAGGTCTGGCTCGATCCAAATGAGGTCAACGAAATCTCCATGGCCAACTCTCGCCAAAACATCAGGAAGCTTGTCAAGGATG GGTTCATCATCAGGAAGCCAACCAATATCCATTCCCGCTCTCGTGCTCGCCGCATGAATGAAGCCAAGAAGAAGGGCCGTCATTCTGGTTACGGTAAAAG GAAGGGTACTAGGGAGGCTAGGCTTCCAACAAAGATCCTGTGGATGAGGAGAATGAGAGTTCTTAGGAGGCTTCTGAGGAAGTATAGGGAAGCAAAGAAG ATTGACAGGCACATGTACCATGACATGTACATGAAGTGCAAGGGTAATGTCTTCAAGAACAAGCGTGTGCTCATGGAGAGTATTCACAAGTCCAAGGCAG AGAAGGCCAGAGAGAAGACCTTGTCTGATCAGTTCGAGGCTAAGAGGGCCAAGAACAAGGCTAGCAGGGAAAGGAAGCATGCCAGGAGAGAGGAACGATT CGCCCAGGGTCCAGTAGCTATGGAGAAGCCTGCAGTTGCTCCAGCTGTTGCTGCCCCTCAAGGAGCATCAAAGAAATCCAAGAAGTGA
AA sequence Show only first row Show all	>Lus10023388 pacid=23180907 polypeptide=Lus10023388 locus=Lus10023388.g ID=Lus10023388.BGIv1.0 annot-version=v1.0 MKCGKKKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTNIHSRSRARRMNEAKKKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKK IDRHMYHDMYMKCKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERFAQGPVAMEKPAVAPAVAAPQGASKKSKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16780			Ribosomal protein L19e family ...		Lus10023388 [exp]	0	1
AT5G20920		EIF2 BETA, EMB1...	embryo defective 1401, eukaryo...		Lus10012186 [exp]	1.7	0.8351
AT3G18240			Ribosomal protein S24/S35, mit...		Lus10022237 [exp]	2.4	0.8124
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10031551 [exp]	2.8	0.8601
AT3G10950			Zinc-binding ribosomal protein...		Lus10006414 [exp]	5.3	0.8443
AT1G30580			GTP binding (.1)		Lus10023261 [exp]	5.8	0.7938
AT5G24840			tRNA (guanine-N-7) methyltrans...		Lus10026965 [exp]	6.0	0.8020
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10016432 [exp]	9.8	0.8186
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Lus10030200 [exp]	9.9	0.8036
AT2G31610			Ribosomal protein S3 family pr...		Lus10033442 [exp]	11.4	0.8167
AT3G10950			Zinc-binding ribosomal protein...		Lus10011359 [exp]	11.4	0.8004

Compare expression of checked genes

Lus10023388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.