Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20430 1070 / 0 Subtilase family protein (.1.2) AT5G44530 1060 / 0 Subtilase family protein (.1) AT1G30600 1009 / 0 Subtilase family protein (.1) AT2G19170 593 / 0 SLP3 subtilisin-like serine protease 3 (.1) AT4G30020 587 / 0 PA-domain containing subtilase family protein (.1) AT1G62340 469 / 1e-152 ALE1 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) AT4G10550 269 / 4e-78 Subtilase family protein (.1.2.3) AT5G67360 262 / 8e-76 ARA12 Subtilase family protein (.1) AT1G04110 259 / 2e-74 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT1G32960 257 / 1e-73 ATSBT3.3 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038416 [exp] 1561 / 0 AT5G44530 1169 / 0.0 Subtilase family protein (.1) Lus10008060 [exp] 1193 / 0 AT4G20430 1112 / 0.0 Subtilase family protein (.1.2) Lus10006973 [exp] 570 / 0 AT4G30020 1334 / 0.0 PA-domain containing subtilase family protein (.1) Lus10001006 [exp] 535 / 6e-179 AT2G19170 629 / 0.0 subtilisin-like serine protease 3 (.1) Lus10000960 [exp] 526 / 6e-175 AT4G30020 658 / 0.0 PA-domain containing subtilase family protein (.1) Lus10040146 [exp] 523 / 1e-173 AT2G19170 655 / 0.0 subtilisin-like serine protease 3 (.1) Lus10001310 [exp] 507 / 6e-168 AT4G30020 1258 / 0.0 PA-domain containing subtilase family protein (.1) Lus10015559 [exp] 454 / 4e-147 AT1G62340 903 / 0.0 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) Lus10011018 [exp] 368 / 5e-116 AT2G19170 445 / 3e-146 subtilisin-like serine protease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G440300 [exp] 1230 / 0 AT4G20430 1107 / 0.0 Subtilase family protein (.1.2) Potri.011G155400 [exp] 1221 / 0 AT4G20430 1143 / 0.0 Subtilase family protein (.1.2) Potri.006G076200 [exp] 586 / 0 AT2G19170 1342 / 0.0 subtilisin-like serine protease 3 (.1) Potri.018G143400 [exp] 582 / 0 AT4G30020 1338 / 0.0 PA-domain containing subtilase family protein (.1) Potri.001G151100 [exp] 557 / 0 AT2G19170 615 / 0.0 subtilisin-like serine protease 3 (.1) Potri.011G010700 [exp] 300 / 5e-92 AT1G62340 631 / 0.0 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) Potri.001G163600 [exp] 285 / 5e-84 AT3G14240 1174 / 0.0 Subtilase family protein (.1) Potri.004G173900 [exp] 277 / 4e-81 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.011G151200 [exp] 276 / 9e-81 AT1G32960 906 / 0.0 Subtilase family protein (.1) Potri.001G450600 [exp] 276 / 1e-80 AT1G32960 772 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10023389 pacid=23181018 polypeptide=Lus10023389 locus=Lus10023389.g ID=Lus10023389.BGIv1.0 annot-version=v1.0 ATGGCGGTAGGCATTCGCTTCGCTAAATTAGTGACGGCGGTGCTATGGTTGGCGGCTGGCGGGTTGTGTCAGAATGAAGCTCCGATTACGGCTGTTTACA TTGTCACACTTAAGCAAACCCCTACTGCTAGAGCTCCTCATTTCTACGGACAACTGGAGAAGAAGACGGATACCAATGTGTTCAGGAACAGGGCAGCTGG GGCTGGCAAGAAACACCACAAAAATCCCAATAATTCAAGGCGTGGTGTGGTGAGCCGGGAATCGTACATAGCTCGTGCCCATGACTCGTTACTGAAGAGG GTGTTGAAGGGGGAGAAGTATCTGAAGCTGTATAGCTACCACTACTTGATTAATGGGTTTGCTGCTTTTGTCACCCCACAACAGGCGGATAGGCTATCGA GAAGGAAGGAAGTTGCGAATGTGGTGTTGGATTACTCTGTTAGAACAGCAACTACACACACTCCTCAGTTCTTGGGACTTCCAGGAGGTGCGTGGGTCCA AGAAGGTGGATATGAGACTGCTGGTGAAGGAATTGTGATTGGCTTCATCGACACCGGGATTGATCCTACTCACCCCAGTTTCTCTGCCGATAATGTTTCG GGAAGCTCCTCATACCCAGTACCAAGCCACTTCTCGGGTGTTTGCGAGGTTACTAGAGACTTCCCTTCTGGTTCTTGCAACAGGAAGCTCGTTGGTGCCC GACATTTTGCAGCATCTGCCATTACTAGGGGCATTTTCAACTCCACTCAAGATTATGCTTCACCTTTTGACGGTGATGGTCATGGCACGCATACAGCTTC TGTTGCTGCAGGAAACCATGGGATACCGGTGATAGTGTCGGGCCATTACTTTGGAAATGCGAGTGGAATGGCTCCTCGTGCACATGTTGCTGTTTACAAG GCACTTTACAAGAGTTTTGGTGGGTTTGCTGCTGATGTTGTTGCTGCAATAGATCAGGCAGCTCAAGATGGAGTTGACATCATAAGTCTATCAATCACTC CAAACAGGCGACCTCCTGGTATTGCTACGTTCTTCAACCCCATCGATATGGCCTTGCTCTCAGCTGTGAAGGCTGGCATTTTCGTCGTCCAAGCAGCAGG CAATACCGGGCCTTCGCCCAAGAGCATGTCTTCCTTCAGTCCATGGATCTTCACTGTTGGTGCTGCTTCTCATGACCGAGTCTACTCTAACTCCGTGACC CTAGGCAACAATGTCACGATTCAAGGCGTTGGCCTAGCACCGGGAACCGACGAAGGTAAAATGTACACATTAGTTTCAGCGGTCCATGCATTGAACAACG AGACTACGGTCACATCTGATATGTACGTGAGCGAATGTCAAGACTCCGGTAGCTTCGATAAAGACATCGTGCAGGGAAACCTCTTGATCTGTAGTTATTC GGTTCGGTTTGTGCTTGGTGTCTCCACGATAAAACAAGCTTTGGAAACCGCCAATAATCTCAGTGCAGCCGGTGTTGTGTTCTGTATGGATCCTTTTGTG CTTGGCTTTCAGCTGAATCCTATTCCCATGGGAATGCCTGGAATCATCATTCCAACCGCTGATGATTCCAAGATCTTGCTTCAGTACTACAATTCTTCGC TCGAAAGAAACGGAGGAAAAGTAGCAAAATTTGGAGCAACTGCTAGCATTTCAGGGGGACTTAAAGCCAACTTTAGTAACTCAGCTCCGAAAGTAATGTA CTACTCTGCTAGAGGACCAGATCCTGAAGATAGTTCTCTTGATGATGCTGATATTATGAAACCCAACTTGGTTGCTCCGGGACACTCTATATGGGCCGCT TGGAGCTCTCTAGGCACCGATTCAGTCGAATTCCAAGGTGAGAACTTTGCAATGATGTCAGGAACCAGCATGGCTGCTCCTCACATTGCAGGGCTTGCTG CTCTAATCAAGCAAAAGTTCCCATCTTTCAGCCCTTCAGCAATAGCTTCTGCACTCTCTACTACAGCCTCTTTATCCGACAAGAATGGTGGCGCGATAAT GGCTCAGCGTGCCTACTCCAACCCGGATGTGAATCAGTCTCCCGCAACTCCATTTGACATGGGGAGTGGCTTTGTGAATGGAACTGGTGCTCTTGACCCG GGTTTGATCTTCGATACTAGCTACGACAAGTATATGTCATTCATCTGCAGTATCAACGGGTCGGGACCAGTAGTCATGAACTTCACAGGCGAAAACTGCT GGATGTACAACTCCACCATCACCGCTGCTGACCTTAACCTGCCCTCTATCGCAATCGCAAAGCTCGACGATCAAACAAGGACTGTGCTACGATCGGTGAC CAATGTAGGTGGTGGCAACGAGACGTACGCAGTGGGCTGGAGTGCACCTTATGGCGTGTCTCTGAAGGTGGCTCCGACTCATTTTGCGATCGGGAACAAC GAGAAGCAAGTGCTGACTATCTCCTTGGCCGCTACGATGAATAGCTCGGCTCCGAGCTACGGGAGGATCGGGCTGTTCGGGGATCACGGTCATGTCATTA ACATTCCATTGGCTGTCATTGCCAAAACCTCGTATAATACTACTACCAGCAACACCAGGAACAGGACATGA
AA sequence Show only first row Show all	>Lus10023389 pacid=23181018 polypeptide=Lus10023389 locus=Lus10023389.g ID=Lus10023389.BGIv1.0 annot-version=v1.0 MAVGIRFAKLVTAVLWLAAGGLCQNEAPITAVYIVTLKQTPTARAPHFYGQLEKKTDTNVFRNRAAGAGKKHHKNPNNSRRGVVSRESYIARAHDSLLKR VLKGEKYLKLYSYHYLINGFAAFVTPQQADRLSRRKEVANVVLDYSVRTATTHTPQFLGLPGGAWVQEGGYETAGEGIVIGFIDTGIDPTHPSFSADNVS GSSSYPVPSHFSGVCEVTRDFPSGSCNRKLVGARHFAASAITRGIFNSTQDYASPFDGDGHGTHTASVAAGNHGIPVIVSGHYFGNASGMAPRAHVAVYK ALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAVKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRVYSNSVT LGNNVTIQGVGLAPGTDEGKMYTLVSAVHALNNETTVTSDMYVSECQDSGSFDKDIVQGNLLICSYSVRFVLGVSTIKQALETANNLSAAGVVFCMDPFV LGFQLNPIPMGMPGIIIPTADDSKILLQYYNSSLERNGGKVAKFGATASISGGLKANFSNSAPKVMYYSARGPDPEDSSLDDADIMKPNLVAPGHSIWAA WSSLGTDSVEFQGENFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTTASLSDKNGGAIMAQRAYSNPDVNQSPATPFDMGSGFVNGTGALDP GLIFDTSYDKYMSFICSINGSGPVVMNFTGENCWMYNSTITAADLNLPSIAIAKLDDQTRTVLRSVTNVGGGNETYAVGWSAPYGVSLKVAPTHFAIGNN EKQVLTISLAATMNSSAPSYGRIGLFGDHGHVINIPLAVIAKTSYNTTTSNTRNRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20430			Subtilase family protein (.1.2...		Lus10023389 [exp]	0	1
AT3G45850			P-loop containing nucleoside t...		Lus10018120 [exp]	2.4	0.9035
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10038084 [exp]	6.6	0.9133
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Lus10015333 [exp]	6.9	0.9022
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10040481 [exp]	13.4	0.9023
AT1G11160			Transducin/WD40 repeat-like su...		Lus10011224 [exp]	15.5	0.8831
AT4G39420			unknown protein		Lus10005786 [exp]	17.9	0.8993
AT2G47500			P-loop nucleoside triphosphate...		Lus10009851 [exp]	18.0	0.8686
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Lus10025461 [exp]	18.0	0.8800
AT4G24610			unknown protein		Lus10000766 [exp]	18.3	0.8943
AT3G08530			Clathrin, heavy chain (.1)		Lus10007499 [exp]	19.4	0.8942

Compare expression of checked genes

Lus10023389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.