Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30800 92 / 3e-22 Fasciclin-like arabinogalactan family protein (.1) AT4G29980 76 / 6e-17 unknown protein AT4G12950 56 / 3e-09 Fasciclin-like arabinogalactan family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038414 [exp] 298 / 2e-102 AT1G30800 117 / 5e-32 Fasciclin-like arabinogalactan family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G440800 [exp] 133 / 2e-36 AT1G30800 103 / 3e-25 Fasciclin-like arabinogalactan family protein (.1) Potri.011G155150 [exp] 81 / 6e-18 AT1G30800 67 / 8e-13 Fasciclin-like arabinogalactan family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023390 pacid=23180942 polypeptide=Lus10023390 locus=Lus10023390.g ID=Lus10023390.BGIv1.0 annot-version=v1.0 ATGTTGAACTTCAACCTCCTTCCGCCGCTTTCCCTCTTCCTCCTTCTCCTCCTAACATCCCCCGCCATGGCCTCCGGCGGCGGCAGCCACTCCCGTTCTC GCCACATTCATCCTCGCCCGCACCACCGCAATAACAATCATAACTCCACCACCGTCATGACTCCCTCTGCTCTTCCTCTTCAGGAGCAGAACTCCTCCTC TTCCAGGCAGCAGCAATTGAACAACATAATCGGCGCCCTGATCGGCGCCGGCGACTTCAACAACTGGGCCAACATCCTCTCAATCGCCGGACCATCCTAC CTCCCGCTCTCGGCGACGTTCTTCATCCCCGCCAACGACTCCCTCGTCTCGACCCCGGCGGAAAACGCCTTCACCGACCCTCTCATCTTCCCTTACCACA TCGTCCCTCAGCGGCTGCCGTCCGACGAGCTTCTCCAGTTCTCCACTCTCTCCCGCCTACCGACGCTTCTCTCCTCCAAAACGATCATCGTCACCAACGA CTCGGCCGCCAATTTCACGCTCGACGGATCTTTGCTCTCGCATCCGGACCTCTTCACTTCCCCTGCCATTGTCGTCCACGGAATCTCCAACCTGATGGAT TACTCGATTTACGGCGACGGCGCTCTGCTGCATACCAACTCCCGTGATCACCCGTCGCCGGTGCAGCAACAGCAGCAAGTCTTGACCTCCGACGGAAGAA TCCGGCACTCTGGAGTGCGATACTCAAAGGACTACATCGAATCTTGGAAGTTCTTGATCTTGTGGTTGCTATTTTAG
AA sequence Show only first row Show all	>Lus10023390 pacid=23180942 polypeptide=Lus10023390 locus=Lus10023390.g ID=Lus10023390.BGIv1.0 annot-version=v1.0 MLNFNLLPPLSLFLLLLLTSPAMASGGGSHSRSRHIHPRPHHRNNNHNSTTVMTPSALPLQEQNSSSSRQQQLNNIIGALIGAGDFNNWANILSIAGPSY LPLSATFFIPANDSLVSTPAENAFTDPLIFPYHIVPQRLPSDELLQFSTLSRLPTLLSSKTIIVTNDSAANFTLDGSLLSHPDLFTSPAIVVHGISNLMD YSIYGDGALLHTNSRDHPSPVQQQQQVLTSDGRIRHSGVRYSKDYIESWKFLILWLLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30800			Fasciclin-like arabinogalactan...		Lus10023390 [exp]	0	1
AT2G04480			unknown protein		Lus10001750 [exp]	16.0	0.6441
					Lus10002102 [exp]	29.9	0.5827
AT4G37700			unknown protein		Lus10025207 [exp]	53.7	0.5748
AT3G58480			calmodulin-binding family prot...		Lus10029324 [exp]	55.9	0.5412
AT2G45210			SAUR-like auxin-responsive pro...		Lus10030295 [exp]	72.1	0.5526
AT3G47570			Leucine-rich repeat protein ki...		Lus10033362 [exp]	90.8	0.5639
AT3G23160			Protein of unknown function (D...		Lus10021210 [exp]	146.6	0.5157
AT3G23160			Protein of unknown function (D...		Lus10022201 [exp]	180.0	0.5042
AT4G18260			Cytochrome b561/ferric reducta...		Lus10042834 [exp]	194.5	0.5119

Compare expression of checked genes

Lus10023390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.