Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16030 515 / 4e-166 CES101 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) AT1G11330 496 / 5e-159 S-locus lectin protein kinase family protein (.1.2) AT4G21390 490 / 2e-156 B120 S-locus lectin protein kinase family protein (.1) AT1G61610 483 / 7e-154 S-locus lectin protein kinase family protein (.1) AT1G65790 478 / 5e-152 ARK1 receptor kinase 1 (.1) AT1G11410 477 / 2e-151 S-locus lectin protein kinase family protein (.1) AT1G11350 470 / 5e-149 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT4G21380 468 / 6e-148 ARK3 receptor kinase 3 (.1) AT1G11300 484 / 6e-147 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G65800 459 / 1e-144 ARK2 receptor kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014812 [exp] 545 / 4e-177 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 518 / 4e-167 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 510 / 3e-164 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 510 / 3e-164 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038554 [exp] 509 / 5e-164 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038411 [exp] 490 / 6e-164 AT1G11330 308 / 1e-98 S-locus lectin protein kinase family protein (.1.2) Lus10038557 [exp] 508 / 2e-163 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033743 [exp] 504 / 7e-162 AT4G21380 608 / 0.0 receptor kinase 3 (.1) Lus10006746 [exp] 502 / 4e-161 AT1G11340 836 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G441400 [exp] 863 / 0 AT3G16030 523 / 1e-174 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.001G442200 [exp] 852 / 0 AT3G16030 528 / 5e-176 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.011G125351 [exp] 546 / 1e-178 AT4G27290 748 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G437950 [exp] 530 / 2e-178 AT4G21390 406 / 5e-135 S-locus lectin protein kinase family protein (.1) Potri.001G414077 [exp] 544 / 1e-177 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G409300 [exp] 536 / 3e-174 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G441180 [exp] 526 / 5e-174 AT3G16030 274 / 3e-82 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.011G125601 [exp] 533 / 3e-173 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125151 [exp] 531 / 2e-172 AT4G27290 757 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014700 [exp] 530 / 1e-171 AT4G21390 671 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF11883 [flax] [poplar] DUF3403 Domain of unknown function (DUF3403) CL0016 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10023391 pacid=23181059 polypeptide=Lus10023391 locus=Lus10023391.g ID=Lus10023391.BGIv1.0 annot-version=v1.0 ATGGCAGCAGCTCCTCTGTTTATTCTCCTCTGTTGGGTCGCCATTGTTGACCACTACTCCTCCTCCTCCTCCGTCTTCGCCGCCGACACCCTCACCCAAG GCGGCCCATCCATTAACTCCACTGAAATTCTTCTTTCTGGAAATGGCTTCTTCACTTTAGGCTTCCTCAACCTATCCGATGCCACCTACCTCGGGATTTG GTACGACAACGACACCAAATCCGTCTTCTGGATAGCCAATCGCGATTCCCCCATCCCCGACGATTCCGGATCCCTCTCTCTCGACCCCACTGGTACCCTA AAGCTCAACTACTCCGGCGGCGACATCCTCCGTCTCTACTCTCCTTCTTCTTCCACAACTGGATTGACCGCAAGGTTAGAAGACACAGGCAATTTATCCG TTTCCGGCAATAACGGACAGCTAACCTTATGGCAGAGTTTCGATTTCCCGACGGATTCCTGGCTCCCAGGGATGAAATTGGGTCGCGGATCGGGTCGGAA TCGGACACTAACCTCCTGGCTTACCGATTCCATCCCTGCTCCAGGCGCGTACACTCTCGAGTGGGACCCTACGGCGGCCGGAGCAGCGCAGATGGTGGTT AAACGGCGTGGGAACGTGTTCTGGACTAGCGGAAGGCAGCTGCGAGGTGACGTCTTCGAGAATTTCGCCGTCGATTCAGGCACGGTGAGCTTCAACGTGT CCCGATTCTCGAACCCTAACGAGGATTACTTGACCTACGCAGCTTCTTCTTCTTTTGGCGGCGAGCGGAACTTCTCAATCTGGAGGCTGAGGCACAACGG CGATATCGTTGACCGGAGCACCAGCCGCGTGATTCTCAACGCCGACTCCTGCGACGGGAATAGTACGGCGAACGGCTGCGTGAGATGGGACGGACCTGAT TGCCGGCGACGGGACGGCGGATCGAGGATGGTGCTGCGGCGGGGCGGATGGGTGAACACTGTGCCGAGAAGAGTGGATAACAACGCTAGTCTCGGCATCG GTGATTGCAAGGACATTTGTTGGCGAGACTGTGGATGCGTCGGTACCACCGTTGGTAACAGTAACGGCAGCGGATTTACCTTCTGGTTTAGGAATTGTAG ATTCTGGTTTGGGAATTTCAGCCAAGATCCTAATTCGAATGCTGTTCAGTATTATGTCATTGTTGGAACCACCTCTGAACCAAGTCTACACCCTGCTACA AAGGAAAGGAATTGGATATGGGCACTGGTTGCTGTTGCAATTGTTCTGTCAACTGTCATCGTCGGTATTCTGTGGTACTTGAGAAGGCGAAAACTCAAAG AGAGGCTATTTGCAGAGCTGATGGCATCCGACACACCAAATGATACGGGCGAGCTGGAAGATGGCAGTGGAGGTGGCGGCGACCATGGACATAACTTGAA AATTTACAGCATCACAACGATAATGGCTGCTACTGACGACTTCTCATTGCTGAATAAGCTTGGACAAGGAGGGTTTGGACCAGTGTTTAAGGGGAAGCTA GCAGAAGGGAGAGAGGTGGCTGTGAAGAGACTGTCGAGAAGTTCAGGACAAGGTCTGGTGGAGTTCAGGAATGAGCTTATACTGATAGCTAAACTACAGC ACACGAATCTCGTGAGGCTTCTCGGCTGTTGCATTCACGGGGAAGAGAAGATGCTAGTCTACGAATACATGCCTAACAAGAGCTTGGATTCTTTTATCTT CGACGAATCAAAGAGGAAGTTGTTAGATTGGAACAAGCGTTTCAGCATCATCGAAGGCATAGCGCAAGGATTGTTGTACCTGCACAAGTACTCGAGAGTG AGGATCATACACAGGGACATGAAAGCTAGTAACATATTGCTTGACGAGAATCTCAGCCCTAAAATCTCAGATTTCGGAATGGCCCGCATTTTCAACACCA ATGCATTGGAAGCGAACACAAACAGGGTTGTGGGCACATACGGTTATATGTCTCCGGAGTATGCCATGGAAGGCACATTCTCCACAAAATCTGACGTATT CAGCTTCGGAGTTTTACTATTGGAAATTGTGAGCGGTCGGAAGAATCATGGTCTTGTTCACCGTGATCCTCCCATCAACCTCGTGGGATACACATGGGAA CTATGGAAAGAAGGGACGCCATTGCAATTGATGGATCCGACATTGGAGGATTCATGCGATAAGAACCAAATTCTCAGATGCATCAACGTGGGGCTACTAT GCATAGAGTACAACGCAGAAGACAGGCCGACAATGTCTGAGGTTATATCGATGCTAACAAGTGAAGTCGTACAGTTACCTACACCGAAGCAACCTGCATT CACATCATCAAGACCGAGAAGCATGAACATCGACACAGGCTCAAGCACAAACAATCTCGATAGTTGCTCGATTAATTATGTCACGATGACAACAATGACT GGTCGGGCAGAAGACAGACCGACAATGTCCGAGGTTATATCGATGCTAACAAGTGAAGTCGTACAGTTACCTACACCGAAGCAACCTTCATTCACAGCAT CAAGACCGAGAAACATAAACATCGATATAGGCTCAAGCACAAGCAGTCCCGGTAGTTGCTCCATCAATAAAGTCATGATGACAACAATGACTGGGCGACG AAACTCGAAATCTAAGATGAAGAACAGTAATACCTTTCCAATTATGGCAGCAGCTCCTCTGTTTATTCTCCTCTGTTCGCTCGTCATTGTTGACCACTAC TCCTCCTCCTCCGTCTTGGCATCCATTAACCCATCTGATATCCTGGACCGGAGCACGGCTGACTCCTGCGACGGGAACAGCACGGCGAACGGCAGCGCGA GATGGGACGGACCTGATTGCCGGCGGCGAGACGGCGGATCGAGGATGGTGGAGCGGCGGGGCGGATTGGTGAACGCGGTGTTGAGAAGAGTGGATAACAA CGCTAGTCTCGGCATCGGCGACTGCAAGGATTTGTGTTGGCGAGATTGTGGATGCGTCGGCACCACCGTTGGTAACAGTAATGGCAGCGGATGTAGCTTC TGGTTTGGGAATTTCAGCCAGGATCCGAATTTGAATGCAGTTCAGTACTACGTCATTGTTGGAGTCGCAAGACCGAGCTACCGCCGATGGCAGAAGTGGG TTTCCACAGAGCTGATGGCATCATCCGATGCACCAAATGACATGGACGAGATGGCAGAAGAGGTTGAAGGCAACGACCATGGACATAACTTGAAAATCTA CAGCGCCGCAACGATAATGGCTGCTACTGACAACTTCTCTTTGCATAATAAGCTTGGACAAGGAGGGTTTGGACCTGTGTTTAAGGTTGTTGGTTTATTT TCTCTCTTTGTAAAAGCCATGGTTGTCAAAGCTACATTGTTTGTTGATGTCACTTCCAACCAGGGGAAGCTAGTGGAAGGGAGAGAGGTAGCTGTGAAGA GACTGTCGAAAAGTTCGGAACAAGGGCTGGTGGAGTTCAGGAATGAGCTTATACTGATAGCCAAGTTACAGCACACGAATCTCGTTAGGCTCCTTGGCGG TTGCATTCACGGGGAAGAAAAAAGATGCTGGTTTACGAATACATGCCTAACAAGAGCTTGGATTCTGTTATCTTCGTTACCTACGCCAAAGCAACCTGCA TTCACATCATCAACACGGAGAAGCATGAACATCGACATAGGCTCAAGCACTAGCACCAACAATCTCGATAATTGCTCGACTAATGAGGTCACGATGACAC CAATGAGTGCTCGGTAG
AA sequence Show only first row Show all	>Lus10023391 pacid=23181059 polypeptide=Lus10023391 locus=Lus10023391.g ID=Lus10023391.BGIv1.0 annot-version=v1.0 MAAAPLFILLCWVAIVDHYSSSSSVFAADTLTQGGPSINSTEILLSGNGFFTLGFLNLSDATYLGIWYDNDTKSVFWIANRDSPIPDDSGSLSLDPTGTL KLNYSGGDILRLYSPSSSTTGLTARLEDTGNLSVSGNNGQLTLWQSFDFPTDSWLPGMKLGRGSGRNRTLTSWLTDSIPAPGAYTLEWDPTAAGAAQMVV KRRGNVFWTSGRQLRGDVFENFAVDSGTVSFNVSRFSNPNEDYLTYAASSSFGGERNFSIWRLRHNGDIVDRSTSRVILNADSCDGNSTANGCVRWDGPD CRRRDGGSRMVLRRGGWVNTVPRRVDNNASLGIGDCKDICWRDCGCVGTTVGNSNGSGFTFWFRNCRFWFGNFSQDPNSNAVQYYVIVGTTSEPSLHPAT KERNWIWALVAVAIVLSTVIVGILWYLRRRKLKERLFAELMASDTPNDTGELEDGSGGGGDHGHNLKIYSITTIMAATDDFSLLNKLGQGGFGPVFKGKL AEGREVAVKRLSRSSGQGLVEFRNELILIAKLQHTNLVRLLGCCIHGEEKMLVYEYMPNKSLDSFIFDESKRKLLDWNKRFSIIEGIAQGLLYLHKYSRV RIIHRDMKASNILLDENLSPKISDFGMARIFNTNALEANTNRVVGTYGYMSPEYAMEGTFSTKSDVFSFGVLLLEIVSGRKNHGLVHRDPPINLVGYTWE LWKEGTPLQLMDPTLEDSCDKNQILRCINVGLLCIEYNAEDRPTMSEVISMLTSEVVQLPTPKQPAFTSSRPRSMNIDTGSSTNNLDSCSINYVTMTTMT GRAEDRPTMSEVISMLTSEVVQLPTPKQPSFTASRPRNINIDIGSSTSSPGSCSINKVMMTTMTGRRNSKSKMKNSNTFPIMAAAPLFILLCSLVIVDHY SSSSVLASINPSDILDRSTADSCDGNSTANGSARWDGPDCRRRDGGSRMVERRGGLVNAVLRRVDNNASLGIGDCKDLCWRDCGCVGTTVGNSNGSGCSF WFGNFSQDPNLNAVQYYVIVGVARPSYRRWQKWVSTELMASSDAPNDMDEMAEEVEGNDHGHNLKIYSAATIMAATDNFSLHNKLGQGGFGPVFKVVGLF SLFVKAMVVKATLFVDVTSNQGKLVEGREVAVKRLSKSSEQGLVEFRNELILIAKLQHTNLVRLLGGCIHGEEKRCWFTNTCLTRAWILLSSLPTPKQPA FTSSTRRSMNIDIGSSTSTNNLDNCSTNEVTMTPMSAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11300			protein serine/threonine kinas...		Lus10023391 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Lus10020456 [exp]	1.0	0.9881
AT2G23770			protein kinase family protein ...		Lus10000577 [exp]	2.6	0.9811
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030589 [exp]	2.8	0.9880
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10031388 [exp]	3.0	0.9842
AT3G11920			glutaredoxin-related (.1)		Lus10030563 [exp]	4.9	0.9821
AT5G62150			peptidoglycan-binding LysM dom...		Lus10015011 [exp]	5.2	0.9795
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10040509 [exp]	5.9	0.9831
AT5G57510			unknown protein		Lus10028472 [exp]	6.3	0.9792
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10023701 [exp]	6.3	0.9838
AT5G56260			Ribonuclease E inhibitor RraA/...		Lus10032885 [exp]	7.2	0.9786

Compare expression of checked genes

Lus10023391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.